Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
39 projects found  

7 accessions found for Synechococcus sp. PCC 7002  

Data for CP000951  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000951.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000951_0981 CDS_1021969-1025811 105.5 1e-29 1
CP000951_0676 CDS_718901-716577 99.1 6.8e-28 1
CP000951_1378 CDS_1473569-1471551 94.2 1.6e-26 1
CP000951_2231 CDS_2353568-2351673 92.5 5e-26 1
CP000951_1241 CDS_1307193-1303567 91.8 7.6e-26 1
CP000951_2602 CDS_2775614-2779906 90.9 1.4e-25 1
CP000951_1360 CDS_1444368-1447427 90.2 2.2e-25 1
CP000951_0853 CDS_895053-897347 89.0 5e-25 1
CP000951_2324 CDS_2448406-2447288 86.8 2e-24 1
CP000951_2463 CDS_2606670-2610953 83.9 1.3e-23 1
CP000951_0144 CDS_153046-149816 83.1 2.2e-23 1
CP000951_0420 CDS_451818-450157 76.9 1.3e-21 1
CP000951_1341 CDS_1425120-1423807 75.0 4.5e-21 1
CP000951_1362 CDS_1450362-1448359 68.6 3e-19 1
CP000951_2533 CDS_2691249-2689447 67.8 4.8e-19 1
CP000951_1424 CDS_1524608-1526119 65.2 2.8e-18 1
CP000951_0886 CDS_934005-931723 63.3 9.6e-18 1
CP000951_0851 CDS_892692-893804 63.1 1.1e-17 1
CP000951_0287 CDS_312347-313519 61.7 2.7e-17 1
CP000951_2065 CDS_2175838-2177133 60.0 8.2e-17 1
CP000951_2785 CDS_2959690-2958572 57.5 4.2e-16 1
CP000951_1521 CDS_1634784-1633645 49.1 9.7e-14 1
CP000951_1093 CDS_1141085-1138260 38.5 9.8e-11 1
CP000951_1332 CDS_1412962-1411844 37.0 2.6e-10 1
CP000951_0819 CDS_861776-861015 34.7 1.2e-09 1
CP000951_2768 CDS_2944557-2943370 34.5 1.4e-09 1
CP000951_0432 CDS_467069-468463 34.4 1.4e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000951_0981 1/1 730 795 .. 1 87 [] 105.5 1e-29
CP000951_0676 1/1 386 452 .. 1 87 [] 99.1 6.8e-28
CP000951_1378 1/1 421 489 .. 1 87 [] 94.2 1.6e-26
CP000951_2231 1/1 369 434 .. 1 87 [] 92.5 5e-26
CP000951_1241 1/1 559 624 .. 1 87 [] 91.8 7.6e-26
CP000951_2602 1/1 1103 1169 .. 1 87 [] 90.9 1.4e-25
CP000951_1360 1/1 629 695 .. 1 87 [] 90.2 2.2e-25
CP000951_0853 1/1 382 448 .. 1 87 [] 89.0 5e-25
CP000951_2324 1/1 140 208 .. 1 87 [] 86.8 2e-24
CP000951_2463 1/1 1195 1263 .. 1 87 [] 83.9 1.3e-23
CP000951_0144 1/1 551 617 .. 1 87 [] 83.1 2.2e-23
CP000951_0420 1/1 299 366 .. 1 87 [] 76.9 1.3e-21
CP000951_1341 1/1 195 260 .. 1 87 [] 75.0 4.5e-21
CP000951_1362 1/1 412 479 .. 1 87 [] 68.6 3e-19
CP000951_2533 1/1 360 426 .. 1 87 [] 67.8 4.8e-19
CP000951_1424 1/1 277 342 .. 1 87 [] 65.2 2.8e-18
CP000951_0886 1/1 382 455 .. 1 87 [] 63.3 9.6e-18
CP000951_0851 1/1 137 205 .. 1 87 [] 63.1 1.1e-17
CP000951_0287 1/1 163 231 .. 1 87 [] 61.7 2.7e-17
CP000951_2065 1/1 192 256 .. 1 87 [] 60.0 8.2e-17
CP000951_2785 1/1 150 217 .. 1 87 [] 57.5 4.2e-16
CP000951_1521 1/1 136 204 .. 1 87 [] 49.1 9.7e-14
CP000951_1093 1/1 719 787 .. 1 87 [] 38.5 9.8e-11
CP000951_1332 1/1 139 207 .. 1 87 [] 37.0 2.6e-10
CP000951_0819 1/1 21 88 .. 1 87 [] 34.7 1.2e-09
CP000951_2768 1/1 162 234 .. 1 87 [] 34.5 1.4e-09
CP000951_0432 1/1 235 299 .. 1 87 [] 34.4 1.4e-09

Alignments of top-scoring domains:
CP000951_0981: domain 1 of 1, from 730 to 795: score 105.5, E = 1e-29
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksefla++sHE+RTP++a++g+aelL++ t+l+++q
CP000951_0 730 AKSEFLATMSHEIRTPMNAVIGMAELLRD---------TDLTAQQ-- 765

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e++++i++++ ll++ind+Ld+s+ie+g
CP000951_0 766 ----------QEFIDIIRNSGSNLLAIINDILDFSKIESG 795

CP000951_0676: domain 1 of 1, from 386 to 452: score 99.1, E = 6.8e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+flan+sHELRTPL+aI+g++elL dt+l+++q
CP000951_0 386 AKSQFLANMSHELRTPLSAILGFTELLTG--------DTNLTSDQ-- 422

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e l++i ++a++ll+Lind+L ls+ieag
CP000951_0 423 ----------LESLDIITQSAQHLLNLINDILSLSKIEAG 452

CP000951_1378: domain 1 of 1, from 421 to 489: score 94.2, E = 1.6e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+f++n+sHELRTPL I+ ++e+L e++ ++l+e+qr
CP000951_1 421 AKSQFISNVSHELRTPLFNIKSFIETLHEYG-------DDLTEQQR- 459

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++let+ +e++rl rL+nd+Ldlsr+e+
CP000951_1 460 ----------QDFLETANNETDRLTRLVNDVLDLSRLESS 489

CP000951_2231: domain 1 of 1, from 369 to 434: score 92.5, E = 5e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+kseflan+sHE+RTPL++++g a+lLl+ +l ++q
CP000951_2 369 EKSEFLANMSHEIRTPLNGVIGVAQLLLT---------MDLKDDQ-- 404

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e++ +i+++++ ll++ind+Ld+ rie+g
CP000951_2 405 ----------AELVAIIEDSGKTLLNIINDILDFLRIESG 434

CP000951_1241: domain 1 of 1, from 559 to 624: score 91.8, E = 7.6e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks flan+sHE+RTP+++I+g aelL++ t l+++q
CP000951_1 559 LKSSFLANMSHEIRTPMNGILGIAELLQT---------TQLNPQQ-- 594

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++t+ ++a++ll ind+Ld+s++eag
CP000951_1 595 ----------QDFIKTLSQSANHLLYVINDILDFSKLEAG 624

CP000951_2602: domain 1 of 1, from 1103 to 1169: score 90.9, E = 1.4e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++fl ++sHELRTPL+a++g+++++++ +++ls ++
CP000951_2 1103 AKNQFLTSMSHELRTPLNAVLGFTQIMER--------SPDLSTDH-- 1139

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+eyl++i+r++++ll+L+nd+L l++ e g
CP000951_2 1140 ----------QEYLSIIHRSGKHLLALLNDILNLAKFEKG 1169

CP000951_1360: domain 1 of 1, from 629 to 695: score 90.2, E = 2.2e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHELRTPL++I+gya++L d+ ls+eq
CP000951_1 629 AKSLFLANMSHELRTPLNGILGYAQILMF--------DESLSAEQ-- 665

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l++i++++++llrLi d+Ld+s+iea+
CP000951_1 666 ----------KSSLSIIEQCGQHLLRLIADVLDFSKIEAQ 695

CP000951_0853: domain 1 of 1, from 382 to 448: score 89.0, E = 5e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++fl+++sHELRTPL+aI+g++elL++ +++l+e +
CP000951_0 382 TKTRFLSSMSHELRTPLNAILGLVELLKD--------SDNLDEYE-- 418

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l+ti +++ +ll+Li+d+Ld+srieag
CP000951_0 419 ----------RGDLQTISDSGIHLLHLIEDILDISRIEAG 448

CP000951_2324: domain 1 of 1, from 140 to 208: score 86.8, E = 2e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+ +sHE+RTPLt+I+g++elL+ ++ ++ ++e +
CP000951_2 140 LKTRFIDIASHEFRTPLTSILGFTELLEQYA-------HKFNPEAQ- 178

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l++i+ +a+rl+ L++d+L sr +ag
CP000951_2 179 ----------RRHLQRIKGAAQRLQTLVDDVLSVSRVDAG 208

CP000951_2463: domain 1 of 1, from 1195 to 1263: score 83.9, E = 1.3e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+ ++sHE+RTPLt+I+g+a++L ++ ++l+e r
CP000951_2 1195 LKTRFIDTASHEFRTPLTVILGAAQILSAYH-------DHLPEARR- 1233

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl+ i++++ rl++Li+dlL++sr+eag
CP000951_2 1234 ----------SQYLNNIEDSVMRLRQLIDDLLTMSRLEAG 1263

CP000951_0144: domain 1 of 1, from 551 to 617: score 83.1, E = 2.2e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTP+++I+g++ lLl ++ l+ eq
CP000951_0 551 AKSMFLATMSHEIRTPMNGIIGMLNLLLY--------SEGLTTEQ-- 587

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e +++l++ae+ll L+nd+Ld+s++eag
CP000951_0 588 ----------QEHAHIALSSAESLLMLLNDILDFSKMEAG 617

CP000951_0420: domain 1 of 1, from 299 to 366: score 76.9, E = 1.3e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++flan HELRTPL++I+g++ l l+e+ ++ +e+
CP000951_0 299 LKNDFLANTTHELRTPLNGIIGFLTLVLDEM-------ADGRAEE-- 336

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ++++a +ll+Lind+Ld+++ie+g
CP000951_0 337 ----------LDFIAAAHESALHLLNLINDILDIAKIESG 366

CP000951_1341: domain 1 of 1, from 195 to 260: score 75.0, E = 4.5e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a++sHELR+P++ I+++++++ + +++qr
CP000951_1 195 QLRQFTADASHELRNPIAMIQTNVQMAIT----------YPDPDQR- 230

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l++i+r ++rl rL+ndlL l+r ++g
CP000951_1 231 ----------QQNLKVIERLTQRLGRLVNDLLFLARSDSG 260

CP000951_1362: domain 1 of 1, from 412 to 479: score 68.6, E = 3e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s ++a HELRTPL++I+ +e L + +++++ee r
CP000951_1 412 TRSNLVAITGHELRTPLSTIQVCLESLAN--------EPDMPEELR- 449

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l+t+l++aerl+ L++d+L+ls++e+g
CP000951_1 450 ----------QVMLDTALQDAERLRTLVQDFLTLSQLESG 479

CP000951_2533: domain 1 of 1, from 360 to 426: score 67.8, E = 4.8e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++fl+++sHEL+TPL+++++++++L+ + +s+e++
CP000951_2 360 LKDDFLSTVSHELNTPLATMKLAIKMLKQ---------PGRSPEKQ- 396

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r yl+++++e++r ++Li dlL+l ++ea
CP000951_2 397 ----------RTYLNILDQELNRESKLIHDLLQLQQAEAS 426

CP000951_1424: domain 1 of 1, from 277 to 342: score 65.2, E = 2.8e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++fl ++ HELRTP+t Irg++el+ ++l+ e+
CP000951_1 277 NQRQFLNDVGHELRTPITIIRGHLELMAI---------ANLPFEE-- 312

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +e + +e++r+ rL+++l l+++e +
CP000951_1 313 ----------QKTVELVVDELDRMGRLVQELILLAKLERP 342

CP000951_0886: domain 1 of 1, from 382 to 455: score 63.3, E = 9.6e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k ef+ +sHEL TPLt+I+g++ +L + ++ +++++
CP000951_0 382 SKKEFIHIMSHELLTPLTSIIGLSNTLSYWT-------ADDNPKKLS 421

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
pe r yl+ti++++ rl++L++d+Ld+s+ ea
CP000951_0 422 PEKQ------RVYLQTIHESGTRLRNLLQDILDFSQTEAA 455

CP000951_0851: domain 1 of 1, from 137 to 205: score 63.1, E = 1.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f+ ++ HE+R+PL+ I + ++ L+++ dt+ls ++
CP000951_0 137 MRSRFITMVCHEFRNPLNNITLSVSSLKRY-------DTHLSLAEK- 175

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ yl++i +er+ ++i+d+L + riea
CP000951_0 176 ----------AGYLSSINANVERMTQIIDDILVIGRIEAK 205

CP000951_0287: domain 1 of 1, from 163 to 231: score 61.7, E = 2.7e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ +sH+L++PL++I ++lL+ ++ +++ +e+
CP000951_0 163 ELEQFAYIASHDLKQPLASIYSWSQLLQVRY-------GNCLDEKG- 201

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yl+ i+++++++ +Li+dlL++sr +
CP000951_0 202 ----------SSYLNAIQDSVRQMTQLIEDLLTYSRVDRV 231

CP000951_2065: domain 1 of 1, from 192 to 256: score 60.0, E = 8.2e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++l++l HELRTPLta+r++ae+L+ l+ +
CP000951_2 192 SQEKLLSDLTHELRTPLTAMRLLAETLEQ----------RLTGLE-- 226

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ il+e++rl L++d L+lsr+e+
CP000951_2 227 ----------LKWAGQILKEINRLFYLVQDWLELSRLESH 256

CP000951_2785: domain 1 of 1, from 150 to 217: score 57.5, E = 4.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f ++sH+LR PLt ++g+++lLl ++ ++ +ee+
CP000951_2 150 DLKSFNYMVSHDLRRPLTKLLGFCDLLLGDV-------DTFDEET-- 187

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e le+i ++a+ ++++i+dl+ l+ i +
CP000951_2 188 ----------LETLEIIANSAKEMNHIISDLMRLAEIKEK 217

CP000951_1521: domain 1 of 1, from 136 to 204: score 49.1, E = 9.7e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++ +l HELRTPL +I++ aelL e +++l+ +++
CP000951_1 136 LRRNLTMALPHELRTPLQGIMTSAELLGE-------CWETLDRQEI- 174

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+ e+i+ +a rl +Li+ +L +++++
CP000951_1 175 ----------REISESIRISASRLHNLIQKFLLYTKLDLA 204

CP000951_1093: domain 1 of 1, from 719 to 787: score 38.5, E = 9.8e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ +sH+L PL + ya+lL ++ +++ +e
CP000951_1 719 ELEQFAYVASHDLQEPLQLVANYAQLLARRN-------GDRLDERS- 757

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+ i ++ ++ +i+dlL +sr+ +
CP000951_1 758 ----------QRYLQHITAGTRTMQTQIQDLLRYSRLNTR 787

CP000951_1332: domain 1 of 1, from 139 to 207: score 37.0, E = 2.6e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f++ l H++RTPL a ++ lLl + +else
CP000951_1 139 QREDFASRLTHDMRTPLIAADRMLNLLLQ------GALGELSEAM-- 177

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l+t+ r+ ll+++n++L+ r e++
CP000951_1 178 ----------QEVLRTMSRSNANLLEMVNNILEVYRYESE 207

CP000951_0819: domain 1 of 1, from 21 to 88: score 34.7, E = 1.2e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+ ++HELR PL++I+g+ +l+l +l e ++e+
CP000951_0 21 FQARFFGQVAHELRSPLSTIMGLQQLILSDL-------CESPDEE-- 58

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++ + +++ ll L++ s+++ g
CP000951_0 59 ----------RAFIAESYAASQKLLGLLDLAIAVSKLDYG 88

CP000951_2768: domain 1 of 1, from 162 to 234: score 34.5, E = 1.4e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++ la+l+H+LR PLt+ + ++e+L+ ++++e ++
CP000951_2 162 FKDQILAMLAHDLRSPLTGTSIAIETLEI--------LSKRPETEKT 200

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
LR ++ + ++++++ ++r+i +lL+ sr
CP000951_2 201 VGLR------GQLYQQAKNQLQIMNRMITELLQESRQLLT 234

CP000951_0432: domain 1 of 1, from 235 to 299: score 34.4, E = 1.4e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
e+l +l HE+RTPLt+Ir++++lLl+ +++ +
CP000951_0 235 PELELLQALTHEIRTPLTTIRTMTKLLLK----------KKTQLT-- 269

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++i+ + ++++i+++ + r+ +
CP000951_0 270 ----------QDIVKRIETIEQECNEQIRRMELIFRAAEL 299


Histogram of all scores:
score obs exp (one = represents 10 sequences)
----- --- ---
-15 1 0|=
-14 14 0|==
-13 49 2|*====
-12 150 64|======*========
-11 327 334|=================================*
-10 464 620|=============================================== *
-9 536 641|====================================================== *
-8 401 479|========================================= *
-7 308 302|==============================*
-6 250 174|=================*=======
-5 131 95|=========*====
-4 54 51|=====*
-3 44 26|==*==
-2 25 14|=*=
-1 19 7|*=
0 3 3|*
1 8 2|*
2 4 1|*
3 1 0|=
4 0 0|
5 2 0|=
> 6 32 -|====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 266.9731
P(chi-square) = 0

Total sequences searched: 2823

Whole sequence top hits:
tophits_s report:
Total hits: 27
Satisfying E cutoff: 27
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 27
Satisfying E cutoff: 27
Total memory: 31K


Acknowledgements:

This research is funded by:

Developed by: