Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
39 projects found  

7 accessions found for Synechococcus sp. PCC 7002  

Data for CP000957  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000957.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000957_0159 CDS_182371-180902 74.1 4.7e-22 1
CP000957_0061 CDS_61443-62570 40.8 1.3e-12 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000957_0159 1/1 248 315 .. 1 87 [] 74.1 4.7e-22
CP000957_0061 1/1 135 203 .. 1 87 [] 40.8 1.3e-12

Alignments of top-scoring domains:
CP000957_0159: domain 1 of 1, from 248 to 315: score 74.1, E = 4.7e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+ n+sHELRTPLt I gy++ Ll+++ + lse q
CP000957_0 248 NQRQFVGNVSHELRTPLTIIEGYLQSLLRRG-------DGLSEYQ-- 285

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ t+ e+ + ++++dlLdl+r++ g
CP000957_0 286 ----------QQAIATAATETTHTIQMLQDLLDLARADGG 315

CP000957_0061: domain 1 of 1, from 135 to 203: score 40.8, E = 1.3e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+++l H+L+TPL + + ++++L+ e + ++ s q
CP000957_0 135 MREDFVSTLTHDLKTPLLGALETLKALRSENF------GPVSLAQ-- 173

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++++ ++ + l+L++ l+d r +a+
CP000957_0 174 ----------HHVFDVMTHSHQKTLQLVETLMDVYRNDAE 203


Histogram of all scores:
score obs exp (one = represents 1 sequences)
----- --- ---
-14 2 0|==
-13 0 0|
-12 5 3|==*==
-11 16 19|================ *
-10 32 36|================================ *
-9 33 37|================================= *
-8 21 28|===================== *
-7 17 17|================*
-6 14 10|=========*====
-5 9 5|====*====
-4 6 2|=*====
-3 5 1|*====
-2 0 0|
-1 0 0|
0 1 0|=
> 1 4 -|====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 7.0176
P(chi-square) = 0.3192

Total sequences searched: 165

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: