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Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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76 projects found  

3 accessions found for Burkholderia cenocepacia MC0-3  

Data for CP000960  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000960.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000960_0031 CDS_30178-32484 73.9 3.3e-21 1
CP000960_0953 CDS_1101977-1103437 71.4 1.7e-20 1
CP000960_0735 CDS_850659-852173 68.3 1.4e-19 1
CP000960_0457 CDS_530988-533330 55.9 4.5e-16 1
CP000960_0014 CDS_11983-10394 52.1 5.2e-15 1
CP000960_0417 CDS_479431-478310 51.5 7.7e-15 1
CP000960_0440 CDS_501873-500596 45.0 5.4e-13 1
CP000960_0303 CDS_336019-334529 43.1 1.8e-12 1
CP000960_0419 CDS_482807-480972 34.9 3.9e-10 2

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000960_0031 1/1 393 458 .. 1 87 [] 73.9 3.3e-21
CP000960_0953 1/1 262 328 .. 1 87 [] 71.4 1.7e-20
CP000960_0735 1/1 273 341 .. 1 87 [] 68.3 1.4e-19
CP000960_0457 1/1 446 510 .. 1 87 [] 55.9 4.5e-16
CP000960_0014 1/1 157 223 .. 1 87 [] 52.1 5.2e-15
CP000960_0417 1/1 151 216 .. 1 87 [] 51.5 7.7e-15
CP000960_0440 1/1 212 270 .. 1 87 [] 45.0 5.4e-13
CP000960_0303 1/1 275 339 .. 1 87 [] 43.1 1.8e-12

Alignments of top-scoring domains:
CP000960_0031: domain 1 of 1, from 393 to 458: score 73.9, E = 3.3e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+e+la++sHELRTPL++I g +e+L++ t + q
CP000960_0 393 LKDELLATVSHELRTPLNVIYGWIEVLRN---------TGDHALQ-- 428

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ i+r+a++l r++ d+Ld s + +g
CP000960_0 429 ----------HQAVDAIDRSARSLTRMVGDILDASSLATG 458

CP000960_0953: domain 1 of 1, from 262 to 328: score 71.4, E = 1.7e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s+f a+l+H+LRTPL+ +rg++e++l+ ++s ++
CP000960_0 262 HLSQFSADLAHDLRTPLNNMRGATEVALA---------RPRSVDE-- 297

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ +le+ l+e +rl r+i+++L l+r+e++
CP000960_0 298 ---------YQMLLESNLEEYDRLARMIENVLFLARAEHP 328

CP000960_0735: domain 1 of 1, from 273 to 341: score 68.3, E = 1.4e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++ n+sH+LRTPLt++ gy+e+L ++ ++l+e++r
CP000960_0 273 QRRELITNISHDLRTPLTSLHGYLETLSLKA-------DTLPEPER- 311

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+yl+++l ++ rL + l +l+r+e+g
CP000960_0 312 ----------RRYLSIALAQSAKVGRLAQALFELARLESG 341

CP000960_0457: domain 1 of 1, from 446 to 510: score 55.9, E = 4.5e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k e l ++sH+LR PL++I gya+lLle ++ q
CP000960_0 446 QKIETLGYVSHDLRAPLSTINGYAKLLLE----------GATRGQ-- 480

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++i+r++++ l+Li++lL ++++e +
CP000960_0 481 ----------ARLIRSIDRSIRYQLALIDELLAFTKAELQ 510

CP000960_0014: domain 1 of 1, from 157 to 223: score 52.1, E = 5.2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s f+a+l+HELR+ L+ +r + +L++ + +++ +
CP000960_0 157 RLSVFIAMLAHELRNHLAPLRNSVGVLQN---------LPDPAPML- 193

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + + r++ +l rL++dlLd ri ag
CP000960_0 194 ----------AQCRDAVNRQVAQLTRLVDDLLDVGRITAG 223

CP000960_0417: domain 1 of 1, from 151 to 216: score 51.5, E = 7.7e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ +l +lsH++RTPL +I+++a+ L + +++e
CP000960_0 151 ARNLLLGMLSHDMRTPLQTIQLTASYLAA---------LNAGEAV-- 186

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ +++r++ r++ L++dl d+ r + g
CP000960_0 187 ----------SEAAARLIRSGGRMQGLLDDLCDFNRTQLG 216

CP000960_0440: domain 1 of 1, from 212 to 270: score 45.0, E = 5.4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la+++H+LRTP+t ++ a+lL +
CP000960_0 212 ERAVMLASIAHDLRTPITRMQVRADLLSD------------------ 240

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r e lr++e+++r i ++Ld++r +
CP000960_0 241 ----------RGDREGFLRDTESMSRVITQFLDFAREIPE 270

CP000960_0303: domain 1 of 1, from 275 to 339: score 43.1, E = 1.8e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a ++HE+R+P+ a+r+ ae +l+ + q
CP000960_0 275 MLGKLAAQVAHEIRNPMGAMRLKAENALA----------GDGRRQ-- 309

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l++il ++er++++++ lL l++ +
CP000960_0 310 ----------QDALRVILAQIERIDAQLSSLLALTQPVRP 339


Histogram of all scores:
score obs exp (one = represents 4 sequences)
----- --- ---
-14 1 0|=
-13 12 0|===
-12 36 24|=====*===
-11 85 124|====================== *
-10 184 231|============================================== *
-9 194 239|================================================= *
-8 189 179|============================================*===
-7 143 112|===========================*========
-6 96 64|===============*========
-5 60 35|========*======
-4 19 19|====*
-3 12 10|==*
-2 9 5|=*=
-1 3 2|*
> 0 10 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 80.0525
P(chi-square) = 4.903e-13

Total sequences searched: 1053

Whole sequence top hits:
tophits_s report:
Total hits: 9
Satisfying E cutoff: 9
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 8
Satisfying E cutoff: 8
Total memory: 24K


Acknowledgements:

This research is funded by:

Developed by: