hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP000960.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]
Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
[no hits above thresholds]
Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
[no hits above thresholds]
Alignments of top-scoring domains:
[no hits above thresholds]
Histogram of all scores:
score obs exp (one = represents 4 sequences)
----- --- ---
-14 1 0|=
-13 10 0|===
-12 14 11|==*=
-11 26 96|======= *
-10 100 223|========================= *
-9 191 254|================================================ *
-8 171 195|=========================================== *
-7 158 123|==============================*=========
-6 105 69|=================*=========
-5 121 37|=========*=====================
-4 49 19|====*========
-3 40 10|==*=======
-2 30 5|=*======
-1 15 2|*===
0 6 1|*=
1 2 0|=
2 8 0|==
3 2 0|=
4 1 0|=
5 1 0|=
6 1 0|=
7 1 0|=
% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 608.3520
P(chi-square) = 0
Total sequences searched: 1053
Whole sequence top hits:
tophits_s report:
Total hits: 0
Satisfying E cutoff: 0
Total memory: 20K
Domain top hits:
tophits_s report:
Total hits: 0
Satisfying E cutoff: 0
Total memory: 20K
