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Thermotogae
Classification of phyla is from NCBI page
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264 projects found  

1 accessions found for Shewanella woodyi ATCC 51908  

Data for CP000961  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000961.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000961_3282 CDS_4059766-4055018 101.1 3.2e-28 1
CP000961_4274 CDS_5234246-5230509 98.2 2.1e-27 1
CP000961_3323 CDS_4111948-4114761 95.4 1.3e-26 1
CP000961_2949 CDS_3646083-3650105 92.1 1.1e-25 1
CP000961_4594 CDS_5616153-5618999 90.6 3e-25 1
CP000961_1688 CDS_2117371-2120877 86.7 3.7e-24 1
CP000961_1499 CDS_1885177-1889619 85.8 6.8e-24 1
CP000961_0823 CDS_1119790-1116068 82.6 5.6e-23 1
CP000961_1032 CDS_1355243-1352784 76.7 2.5e-21 1
CP000961_2807 CDS_3462106-3463836 74.5 1.1e-20 1
CP000961_3418 CDS_4223013-4221718 72.6 3.7e-20 1
CP000961_1029 CDS_1351138-1348757 71.4 8.1e-20 1
CP000961_1944 CDS_2415460-2420601 70.9 1.1e-19 1
CP000961_3495 CDS_4314243-4311253 70.6 1.4e-19 1
CP000961_1943 CDS_2410403-2415445 69.0 4e-19 1
CP000961_3876 CDS_4779779-4778433 62.9 2.1e-17 1
CP000961_0288 CDS_357117-355636 61.4 5.5e-17 1
CP000961_4599 CDS_5624226-5625272 58.0 5.2e-16 1
CP000961_1600 CDS_2006220-2007332 57.0 9.7e-16 1
CP000961_4208 CDS_5152104-5153372 55.7 2.4e-15 1
CP000961_3919 CDS_4830742-4829378 54.5 5e-15 1
CP000961_2226 CDS_2758511-2755947 54.4 5.4e-15 1
CP000961_0280 CDS_341009-339630 52.6 1.8e-14 1
CP000961_2104 CDS_2597762-2595585 52.4 2e-14 1
CP000961_2980 CDS_3689441-3688179 52.0 2.6e-14 1
CP000961_1021 CDS_1341039-1339777 51.6 3.2e-14 1
CP000961_1266 CDS_1615234-1617273 49.6 1.2e-13 1
CP000961_0149 CDS_183264-181954 49.4 1.4e-13 1
CP000961_3933 CDS_4848307-4847006 47.8 4.1e-13 1
CP000961_2699 CDS_3338041-3334619 46.5 9.1e-13 1
CP000961_2572 CDS_3173701-3175074 46.1 1.2e-12 1
CP000961_0089 CDS_108979-111096 40.1 6.1e-11 1
CP000961_2310 CDS_2863433-2865445 39.0 1.3e-10 1
CP000961_1707 CDS_2141815-2139989 38.3 2e-10 1
CP000961_2772 CDS_3419182-3417572 37.0 4.6e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000961_3282 1/1 840 905 .. 1 87 [] 101.1 3.2e-28
CP000961_4274 1/1 733 798 .. 1 87 [] 98.2 2.1e-27
CP000961_3323 1/1 301 366 .. 1 87 [] 95.4 1.3e-26
CP000961_2949 1/1 600 665 .. 1 87 [] 92.1 1.1e-25
CP000961_4594 1/1 416 481 .. 1 87 [] 90.6 3e-25
CP000961_1688 1/1 503 568 .. 1 87 [] 86.7 3.7e-24
CP000961_1499 1/1 697 762 .. 1 87 [] 85.8 6.8e-24
CP000961_0823 1/1 484 549 .. 1 87 [] 82.6 5.6e-23
CP000961_1032 1/1 301 366 .. 1 87 [] 76.7 2.5e-21
CP000961_2807 1/1 215 280 .. 1 87 [] 74.5 1.1e-20
CP000961_3418 1/1 205 271 .. 1 87 [] 72.6 3.7e-20
CP000961_1029 1/1 274 339 .. 1 87 [] 71.4 8.1e-20
CP000961_1944 1/1 1020 1088 .. 1 87 [] 70.9 1.1e-19
CP000961_3495 1/1 500 565 .. 1 87 [] 70.6 1.4e-19
CP000961_1943 1/1 989 1057 .. 1 87 [] 69.0 4e-19
CP000961_3876 1/1 229 290 .. 1 87 [] 62.9 2.1e-17
CP000961_0288 1/1 262 327 .. 1 87 [] 61.4 5.5e-17
CP000961_4599 1/1 126 183 .. 1 79 [. 58.0 5.2e-16
CP000961_1600 1/1 136 202 .. 1 87 [] 57.0 9.7e-16
CP000961_4208 1/1 224 289 .. 1 87 [] 55.7 2.4e-15
CP000961_3919 1/1 231 295 .. 1 87 [] 54.5 5e-15
CP000961_2226 1/1 492 557 .. 1 87 [] 54.4 5.4e-15
CP000961_0280 1/1 244 306 .. 1 87 [] 52.6 1.8e-14
CP000961_2104 1/1 498 563 .. 1 87 [] 52.4 2e-14
CP000961_2980 1/1 220 286 .. 1 87 [] 52.0 2.6e-14
CP000961_1021 1/1 200 269 .. 1 87 [] 51.6 3.2e-14
CP000961_1266 1/1 302 367 .. 1 87 [] 49.6 1.2e-13
CP000961_0149 1/1 231 291 .. 1 87 [] 49.4 1.4e-13
CP000961_3933 1/1 213 278 .. 1 87 [] 47.8 4.1e-13
CP000961_2699 1/1 780 846 .. 1 87 [] 46.5 9.1e-13
CP000961_2572 1/1 238 302 .. 1 87 [] 46.1 1.2e-12
CP000961_0089 1/1 467 534 .. 1 87 [] 40.1 6.1e-11
CP000961_2310 1/1 266 332 .. 1 87 [] 39.0 1.3e-10
CP000961_1707 1/1 373 441 .. 1 87 [] 38.3 2e-10
CP000961_2772 1/1 315 380 .. 1 87 [] 37.0 4.6e-10

Alignments of top-scoring domains:
CP000961_3282: domain 1 of 1, from 840 to 905: score 101.1, E = 3.2e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+flan+sHE+RTP++aI+g+++l+le t+l+ +q
CP000961_3 840 AKSDFLANMSHEIRTPMNAIIGMSHLALE---------TDLDRKQ-- 875

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r y++++ r+ae+ll +ind+Ld+s+ieag
CP000961_3 876 ----------RNYIDKVNRSAESLLGIINDILDFSKIEAG 905

CP000961_4274: domain 1 of 1, from 733 to 798: score 98.2, E = 2.1e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHE+RTP++aI+g+++l+++ t l+++q
CP000961_4 733 YKSEFLANMSHEIRTPMNAIIGMLQLAQR---------TSLTPQQ-- 768

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+++ +a++llr+ind+Ld+s+ieag
CP000961_4 769 ----------EDYLDKAGFSAQSLLRIINDILDFSKIEAG 798

CP000961_3323: domain 1 of 1, from 301 to 366: score 95.4, E = 1.3e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g+a+ Ll+ t+l q
CP000961_3 301 IKSEFLANMSHELRTPLNGVIGFAKQLLK---------TPLHTSQ-- 336

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y++ti+++a ll++ind+Ld+s++eag
CP000961_3 337 ----------QDYINTIEKSATNLLEIINDILDFSKLEAG 366

CP000961_2949: domain 1 of 1, from 600 to 665: score 92.1, E = 1.1e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++flan+sHE+RTP++aI+g+++l+l+ ++l+++q
CP000961_2 600 AKGDFLANMSHEIRTPMNAIIGMSHLALN---------ADLNPKQ-- 635

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r y+++i+ +a++ll +ind+Ld+s++eag
CP000961_2 636 ----------RGYVSKIDMAAKSLLGIINDILDFSKMEAG 665

CP000961_4594: domain 1 of 1, from 416 to 481: score 90.6, E = 3e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksefla +sHE+RTP+++++g+++lL + tel+ +q
CP000961_4 416 AKSEFLACMSHEIRTPMNGVLGMLSLLSR---------TELDQDQ-- 451

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ le+++ +a++ll Lind+Ld+s+ie+g
CP000961_4 452 ----------QHHLEIAQGSAKSLLTLINDILDFSKIESG 481

CP000961_1688: domain 1 of 1, from 503 to 568: score 86.7, E = 3.7e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHE+R PL+a++g +elLl+ + l+ eq
CP000961_1 503 AKSRFLATMSHEIRSPLNAVLGSVELLLD---------SMLNKEQ-- 538

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r y +t+++++ ll+ ind+Ld+s+ieag
CP000961_1 539 ----------RLYAQTAREAGTALLSTINDILDFSKIEAG 568

CP000961_1499: domain 1 of 1, from 697 to 762: score 85.8, E = 6.8e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksefla++sHE+RTP+++++g++ lL + t l++ q
CP000961_1 697 AKSEFLASMSHEIRTPMNGVLGMLGLLNN---------TQLTDYQ-- 732

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +++++++a++ll Lind+Ld+s+i+ag
CP000961_1 733 ----------KRRVSIAQSSAKSLLTLINDILDYSKIDAG 762

CP000961_0823: domain 1 of 1, from 484 to 549: score 82.6, E = 5.6e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE RTP++aI+g+++l+l+ t l+ q
CP000961_0 484 AKSNFLAHMSHEVRTPMNAIIGLSQLMLK---------TSLDKRQ-- 519

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ e++l++++ ll+ ind+Ld+s+iea+
CP000961_0 520 ----------RDFMEKVLSSSDVLLNTINDVLDYSKIEAN 549

CP000961_1032: domain 1 of 1, from 301 to 366: score 76.7, E = 2.5e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks fl+++sHELRTP++a++g ++lL +++++e
CP000961_1 301 TKSSFLSMMSHELRTPMNAVLGSLDLLSL---------SKQTPES-- 336

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+++et+ +a+ l ++nd+Ld+ +ieag
CP000961_1 337 ----------RDLIETATTSAKNLIFILNDILDINKIEAG 366

CP000961_2807: domain 1 of 1, from 215 to 280: score 74.5, E = 1.1e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+a++ HELRTPL++++g++el+ e t ls+ q
CP000961_2 215 STKDFVAMINHELRTPLNGLLGNTELMIE---------TRLSDYQ-- 250

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ + +++e l +indlLd+s+i ag
CP000961_2 251 ----------EKLIKNMVQSGELLKVIINDLLDISKINAG 280

CP000961_3418: domain 1 of 1, from 205 to 271: score 72.6, E = 3.7e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+an+sHEL+TPLt+++gy+e+++e + + +
CP000961_3 205 MRKDFVANVSHELKTPLTVLQGYLEMMQE---------MAEPGSPN- 241

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + ++++++r+++++++lL lsrie
CP000961_3 242 ----------IKAMDQMQQQTNRMRSMVEQLLVLSRIEDS 271

CP000961_1029: domain 1 of 1, from 274 to 339: score 71.4, E = 8.1e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+sefl+++ HELRTP++a++g ++lL+ +++s+e
CP000961_1 274 TQSEFLSMMNHELRTPMNAVIGSLDLLRL---------SKQSSES-- 309

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e++et+ ++a l +++nd+Ld+ +ie+g
CP000961_1 310 ----------MELIETATSSATNLMNILNDILDINKIESG 339

CP000961_1944: domain 1 of 1, from 1020 to 1088: score 70.9, E = 1.1e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++++a+ L + ++++l+e +
CP000961_1 1020 YKSEFLANMSHELRTPLNSLLLLAKGLAD------NKSQHLDETE-- 1058

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e ++i + ++ ll Lind++dls+ eag
CP000961_1 1059 ----------VEDAKIIFDGGNNLLCLINDIMDLSKVEAG 1088

CP000961_3495: domain 1 of 1, from 500 to 565: score 70.6, E = 1.4e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTPL++++g++ lL ++l+ q
CP000961_3 500 AKSLFLATMSHEIRTPLNGLLGTLTLLGH---------SNLPVAQ-- 535

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l + ++ l+ +nd+Ld+sr+e+g
CP000961_3 536 ----------KQMLALSQYSGTLLQTVLNDILDFSRLEQG 565

CP000961_1943: domain 1 of 1, from 989 to 1057: score 69.0, E = 4e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++++a+ L + ++ +l+e +
CP000961_1 989 YKSEFLANMSHELRTPLNSLLLLAKGLAD------NKSKNLNETE-- 1027

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e ++i + ++ ll Lind++dls+ eag
CP000961_1 1028 ----------VEDAQVIFDGGNNLLCLINDIMDLSKVEAG 1057

CP000961_3876: domain 1 of 1, from 229 to 290: score 62.9, E = 2.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a+lsHELRTPLt + ++ + +e+++
CP000961_3 229 SQRQLIADLSHELRTPLTRLDIALGAVKERGE--------------- 260

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e +e+i+re+ ++++L++d L+l+++e++
CP000961_3 261 ----------DENIERIDRESSHIRKLVEDTLTLAWLENE 290

CP000961_0288: domain 1 of 1, from 262 to 327: score 61.4, E = 5.5e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+ +f+ +lsH+L+TPLt+++gy+++ l + se
CP000961_0 262 ARHDFMLHLSHDLKTPLTSLQGYIDTWLL---------MPDSERS-- 297

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++e++ +++++l+rL++++L+l+ +e+g
CP000961_0 298 ----------SDLIEVAANSGRHLQRLLSQMLELAALENG 327

CP000961_4599: domain 1 of 1, from 126 to 183: score 58.0, E = 5.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + +++nl+HE+++PL ++rg+a+lL + el ++q+
CP000961_4 126 AAQYLVRNLAHEIKNPLGGLRGAAQLLSR----------ELHDPQL- 161

peLRledpeyreyletilreaerllrLindlL<-*
e+++ i+++a+rl++L+++lL
CP000961_4 162 ----------NEFTDLIIEQADRLRNLVDRLL 183

CP000961_1600: domain 1 of 1, from 136 to 202: score 57.0, E = 9.7e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a+l+H+ RTPLta ++ya+ L ++l++ r
CP000961_1 136 ALGKMVATLAHQVRTPLTAALLYASNLGS---------PKLTDVSR- 172

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ++ + ++ l++++nd+L +++ +++
CP000961_1 173 ----------KRFQGKLVDRLNELEHQVNDMLLMAKGRQQ 202

CP000961_4208: domain 1 of 1, from 224 to 289: score 55.7, E = 2.4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f+ ++sHELRTPLt I+g+++lL+ + +++ +
CP000961_4 224 QEQAFAKYASHELRTPLTIIQGATKLLEL----------DGDAKFH- 259

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e+i ++a +++ i+ lL l + e+
CP000961_4 260 ----------CRQRERIAKAATDMNQTIEALLSLVKHEQS 289

CP000961_3919: domain 1 of 1, from 231 to 295: score 54.5, E = 5e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++ ++sHELRTP+t ++g +e L++ l++ +
CP000961_3 231 SRQRWITDISHELRTPITIMMGELECLED----------GLTPFD-- 265

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ++++e+ l++L+ dl +l+ +e+g
CP000961_3 266 ----------SKAVTSLKEEVSGLNKLVADLHQLTIAEQG 295

CP000961_2226: domain 1 of 1, from 492 to 557: score 54.4, E = 5.4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fla++sH+L +PL+a +++++ L e + + +
CP000961_2 492 SKTKFLAAVSHDLLQPLNAAQLFTSSLAE---------QVSDIKS-- 527

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l +i ++++ l++Li+ l d+s+++ag
CP000961_2 528 ----------FSLLGSISSSLDDLENLISTLVDISKLDAG 557

CP000961_0280: domain 1 of 1, from 244 to 306: score 52.6, E = 1.8e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++++++sHELRTPLt +++++ l+++ + ++e+
CP000961_0 244 SQQRLISDISHELRTPLTRLQLALALARK--------KGVDTAET-- 280

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++i eae+l+ +i +lL+lsr +
CP000961_0 281 --------------QRIGYEAEQLELMIAELLELSRVKLN 306

CP000961_2104: domain 1 of 1, from 498 to 563: score 52.4, E = 2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + + lsHELRTP++++r +e L + l+++
CP000961_2 498 YLENMSSRLSHELRTPVAVVRSSLEHLGL---------QSLDPDS-- 533

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y++++++ + rl+ ++n++ + +r+e+
CP000961_2 534 ----------RKYVDRAQEGVSRLNMILNNMSEATRLEES 563

CP000961_2980: domain 1 of 1, from 220 to 286: score 52.0, E = 2.6e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ef + +sHELRTP+ +I+g +elL++ +el+
CP000961_2 220 REKEFSRFASHELRTPIMVIKGSTELLQK--------VPELPHVA-- 256

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +++r+++ ++ L + +L l r+ +
CP000961_2 257 ----------TKAIARLERASDEMELLTETFLLLGRAAIE 286

CP000961_1021: domain 1 of 1, from 200 to 269: score 51.6, E = 3.2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + ++sHE+RTPL+ +++++ l+ + ++ s+eqr+
CP000961_1 200 SQKHLSNAVSHEIRTPLARLKFALALMPQYC-------QPDSDEQRR 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+le ++ +++ +++L+++lL+++ +e++
CP000961_1 240 ----------TEFLEEMKLDVKEMENLLQELLTYASLESQ 269

CP000961_1266: domain 1 of 1, from 302 to 367: score 49.6, E = 1.2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++ +++H++++ L +++g++elL+ + +ee++
CP000961_1 302 AMGQLVGGIAHDFNNILGVLKGNLELLEL----------KITEEKL- 337

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl+ + ++ +r +L ++lL++sr e+
CP000961_1 338 ----------LRYLKNAFKACQRGTDLTRRLLQFSRQEQF 367

CP000961_0149: domain 1 of 1, from 231 to 291: score 49.4, E = 1.4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++a++sH+LRTPLt Ir+++e++ e e+
CP000961_0 231 DRALLMAGISHDLRTPLTRIRLASEMMVE--------------ED-- 261

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + i +++e ++++in++ + r +++
CP000961_0 262 ----------EYLKDGIVHDIEDMDAIINQFIAYIRQDQE 291

CP000961_3933: domain 1 of 1, from 213 to 278: score 47.8, E = 4.1e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +++sH+L+TP++ +r+ +e+L+e +++e+ r
CP000961_3 213 DNKLLSRAVSHDLKTPIARLRFGIEVLEE----------NQNEQLR- 248

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y++++ r+++ +++L+ lL ++r+++
CP000961_3 249 ----------EKYFQRLNRDLDTMEELVMTLLSYARLDQA 278

CP000961_2699: domain 1 of 1, from 780 to 846: score 46.5, E = 9.1e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+fla++ H+L +PL+a r+++ L +++l+ e
CP000961_2 780 SKSKFLAAVGHDLMQPLNAARLFTASLSQ--------YPNLDQEG-- 816

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l+ + ++++ +L+ dlLd+s++++g
CP000961_2 817 ----------RTTLSHVNSSLKIAGELLTDLLDISKLDSG 846

CP000961_2572: domain 1 of 1, from 238 to 302: score 46.1, E = 1.2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++l+++sHELRTPL+ ++++lL + l++ +
CP000961_2 238 NQQRLLRDVSHELRTPLARQELALHLLSK----------QLNDSH-- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l+++++e +++Lin +L +sr+ +
CP000961_2 273 ----------LTLLHRLEHENAEMSALINTMLNFSRLNNA 302

CP000961_0089: domain 1 of 1, from 467 to 534: score 40.1, E = 6.1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++a+++HE+++P ++I+g+ elL+ el ++++ +
CP000961_0 467 ALGELTAGIAHEINNPTAVILGNMELLKFEL--------GQNADCV- 504

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e +e +++++ r++ +i+ lL++sr ++
CP000961_0 505 ----------EEEIELVIQQVGRISTIIRSLLQYSRPGEF 534

CP000961_2310: domain 1 of 1, from 266 to 332: score 39.0, E = 1.3e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k l+++ HE+RTP++a++gy+++L++ + + ++
CP000961_2 266 SKVAVLSAINHEIRTPINAVLGYSHMLKN--------ADCCAPQG-- 302

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++i+ +a+ l + ++ L +s++ a
CP000961_2 303 ----------DMTINKIIWSANLLHSVAENTLNFSKASAD 332

CP000961_1707: domain 1 of 1, from 373 to 441: score 38.3, E = 2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + a++ HE+++PL+aI+ ya+ l+ l + +++e
CP000961_1 373 VIGSLSASINHEINQPLAAIKSYAQNTLTLL------SRNKTEHV-- 411

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++ti++ ++rl +++++ ++r +g
CP000961_1 412 ----------KDNIHTIISLTNRLATIVSQFKSFTRKSQG 441

CP000961_2772: domain 1 of 1, from 315 to 380: score 37.0, E = 4.6e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e +++++H LR+PL++I +++e + ++ s+e
CP000961_2 315 ELGEVTRGIAHSLRNPLHTIGLLSESAIQ---------ADNSAEA-- 350

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l++i++ + +++ i+ lL+ls e
CP000961_2 351 ----------AQQLKKIQHKIAMMDKSIQSLLTLSSNEVD 380


Histogram of all scores:
score obs exp (one = represents 17 sequences)
----- --- ---
-14 10 0|=
-13 53 3|*===
-12 208 111|======*======
-11 488 578|============================= *
-10 843 1073|================================================== *
-9 987 1108|==========================================================*
-8 833 829|================================================*
-7 614 522|==============================*======
-6 336 300|=================*==
-5 210 165|=========*===
-4 106 88|=====*=
-3 64 46|==*=
-2 32 24|=*
-1 26 12|*=
0 11 6|*
1 4 3|*
2 3 1|*
3 3 0|=
4 0 0|
5 0 0|
6 1 0|=
7 0 0|
8 1 0|=
9 1 0|=
10 1 0|=
11 0 0|
12 4 0|=
13 0 0|
14 0 0|
15 2 0|=
16 1 0|=
17 0 0|
18 0 0|
19 1 0|=
> 20 37 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 221.0610
P(chi-square) = 2.707e-310

Total sequences searched: 4880

Whole sequence top hits:
tophits_s report:
Total hits: 35
Satisfying E cutoff: 35
Total memory: 22K

Domain top hits:
tophits_s report:
Total hits: 35
Satisfying E cutoff: 35
Total memory: 35K


Acknowledgements:

This research is funded by:

Developed by: