Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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264 projects found  

3 accessions found for Klebsiella pneumoniae 342  

Data for CP000964  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP000964.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000964_2045 CDS_2158524-2156746 82.6 6.4e-24 1
CP000964_0029 CDS_29963-31465 65.1 8.9e-19 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000964_2045 1/1 390 458 .. 1 70 [] 82.6 6.4e-24
CP000964_0029 1/1 304 370 .. 1 70 [] 65.1 8.9e-19

Alignments of top-scoring domains:
CP000964_2045: domain 1 of 1, from 390 to 458: score 82.6, E = 6.4e-24
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ERa IARELHDs++QsLs +k+q++ ++++ d+ p+e r+ l +i
CP000964_2 390 ERATIARELHDSIAQSLSCMKMQVSCLQMQG--DALPAESRQLLGQI 434

relarealaevRrllgdLR.paal<-*
r ++++ a++R+ll+++R ++
CP000964_2 435 RNELNTSWAQLRELLTTFRlQLTE 458

CP000964_0029: domain 1 of 1, from 304 to 370: score 65.1, E = 8.9e-19
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
R+ ARELHD +gQ+++ai+ q++ ++rl+ +++ +r+ + i
CP000964_0 304 VRRDVARELHDDIGQTITAIRTQAGIVQRLA---PNNASVRQSGQLI 347

relarealaevRrllgdLRpaal<-*
++l+ ++ vRrllg+LRp +l
CP000964_0 348 EQLSLGVYDSVRRLLGRLRPRQL 370


Histogram of all scores:
score obs exp (one = represents 17 sequences)
----- --- ---
-16 1 0|=
-15 5 0|=
-14 60 0|====
-13 151 0|=========
-12 206 60|===*=========
-11 295 497|================== *
-10 809 1153|================================================ *
-9 979 1310|==========================================================*
-8 835 1009|================================================== *
-7 675 634|=====================================*==
-6 488 359|=====================*=======
-5 404 192|===========*============
-4 211 100|=====*=======
-3 121 51|==*=====
-2 77 26|=*===
-1 50 13|*==
0 23 6|*=
1 13 3|*
2 4 1|*
3 7 0|=
4 3 0|=
5 1 0|=
6 0 0|
> 7 7 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 1376.4375
P(chi-square) = 0

Total sequences searched: 5425

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: