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Classification of phyla is from NCBI page
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264 projects found  

1 accessions found for Xanthomonas oryzae pv. oryzae PXO99A  

Data for CP000967  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000967.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000967_1726 CDS_1791345-1793501 94.0 3.2e-26 1
CP000967_1819 CDS_1915248-1911154 91.9 1.3e-25 1
CP000967_3038 CDS_3195778-3193013 85.1 1.1e-23 1
CP000967_3039 CDS_3200217-3196660 85.0 1.2e-23 1
CP000967_3040 CDS_3204088-3200513 84.1 2.1e-23 1
CP000967_4604 CDS_4853859-4856042 83.9 2.3e-23 1
CP000967_4115 CDS_4343577-4344905 81.0 1.6e-22 1
CP000967_3933 CDS_4153944-4155200 76.6 2.8e-21 1
CP000967_2205 CDS_2311082-2307687 67.0 1.5e-18 1
CP000967_1464 CDS_1500161-1498548 66.8 1.7e-18 1
CP000967_4473 CDS_4715383-4713347 64.5 7.4e-18 1
CP000967_1011 CDS_1041019-1043679 63.7 1.3e-17 1
CP000967_4795 CDS_5049359-5045907 63.6 1.3e-17 1
CP000967_1089 CDS_1129567-1130784 55.8 2.3e-15 1
CP000967_0292 CDS_309399-310436 54.9 4e-15 1
CP000967_4021 CDS_4243331-4245976 54.1 6.9e-15 1
CP000967_1430 CDS_1459916-1458723 52.0 2.7e-14 1
CP000967_4029 CDS_4254422-4253037 51.8 3e-14 1
CP000967_3952 CDS_4171343-4169979 51.4 3.8e-14 1
CP000967_0914 CDS_942254-944065 48.1 3.3e-13 1
CP000967_1270 CDS_1296796-1298058 47.7 4.2e-13 1
CP000967_1347 CDS_1385220-1385939 45.1 2.3e-12 1
CP000967_2118 CDS_2217867-2216791 42.7 1.1e-11 1
CP000967_0575 CDS_610714-609272 41.5 2.4e-11 1
CP000967_0438 CDS_472978-472742 38.4 1.9e-10 1
CP000967_0234 CDS_243220-241976 33.5 4.5e-09 1
CP000967_0972 CDS_1010875-1009376 28.6 1.1e-07 1
CP000967_3288 CDS_3483178-3481655 28.1 1.6e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000967_1726 1/1 181 246 .. 1 87 [] 94.0 3.2e-26
CP000967_1819 1/1 643 708 .. 1 87 [] 91.9 1.3e-25
CP000967_3038 1/1 550 615 .. 1 87 [] 85.1 1.1e-23
CP000967_3039 1/1 807 872 .. 1 87 [] 85.0 1.2e-23
CP000967_3040 1/1 810 875 .. 1 87 [] 84.1 2.1e-23
CP000967_4604 1/1 68 133 .. 1 87 [] 83.9 2.3e-23
CP000967_4115 1/1 209 273 .. 1 87 [] 81.0 1.6e-22
CP000967_3933 1/1 209 275 .. 1 87 [] 76.6 2.8e-21
CP000967_2205 1/1 746 812 .. 1 87 [] 67.0 1.5e-18
CP000967_1464 1/1 315 381 .. 1 87 [] 66.8 1.7e-18
CP000967_4473 1/1 298 364 .. 1 87 [] 64.5 7.4e-18
CP000967_1011 1/1 652 720 .. 1 87 [] 63.7 1.3e-17
CP000967_4795 1/1 784 850 .. 1 87 [] 63.6 1.3e-17
CP000967_1089 1/1 195 261 .. 1 87 [] 55.8 2.3e-15
CP000967_0292 1/1 116 175 .. 1 79 [. 54.9 4e-15
CP000967_4021 1/1 516 581 .. 1 87 [] 54.1 6.9e-15
CP000967_1430 1/1 176 240 .. 1 87 [] 52.0 2.7e-14
CP000967_4029 1/1 242 307 .. 1 87 [] 51.8 3e-14
CP000967_3952 1/1 235 300 .. 1 87 [] 51.4 3.8e-14
CP000967_0914 1/1 368 436 .. 1 87 [] 48.1 3.3e-13
CP000967_1270 1/1 202 268 .. 1 87 [] 47.7 4.2e-13
CP000967_1347 1/1 15 80 .. 1 87 [] 45.1 2.3e-12
CP000967_2118 1/1 131 201 .. 1 87 [] 42.7 1.1e-11
CP000967_0575 1/1 268 334 .. 1 87 [] 41.5 2.4e-11
CP000967_0438 1/1 10 71 .. 1 87 [] 38.4 1.9e-10
CP000967_0234 1/1 182 247 .. 1 87 [] 33.5 4.5e-09
CP000967_0972 1/1 292 349 .. 1 87 [] 28.6 1.1e-07
CP000967_3288 1/1 127 197 .. 1 87 [] 28.1 1.6e-07

Alignments of top-scoring domains:
CP000967_1726: domain 1 of 1, from 181 to 246: score 94.0, E = 3.2e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+flan+sHE+RTPL++++g++e+L + t l+ eq
CP000967_1 181 AKSRFLANMSHEFRTPLNGLSGMTEVLAT---------TRLDVEQ-- 216

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l+ti+ +a++ll+L++++Ld+s ieag
CP000967_1 217 ----------KECLNTIQASARSLLSLVEEVLDISAIEAG 246

CP000967_1819: domain 1 of 1, from 643 to 708: score 91.9, E = 1.3e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+flan+sHE+RTP++aI+g++ lL++ +el+
CP000967_1 643 SKSDFLANMSHEIRTPMNAILGMLYLLQR---------SELPGAA-- 678

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ +i+r+a+ ll++ind+Ld+s+ieag
CP000967_1 679 ----------QDMVAKIDRSARTLLEIINDILDFSKIEAG 708

CP000967_3038: domain 1 of 1, from 550 to 615: score 85.1, E = 1.1e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++fla+l HE RTP+t+++g++elLl+ t l+ q
CP000967_3 550 AKTRFLATLGHEVRTPMTGVLGMSELLLK---------TSLDITQ-- 585

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r y+e+i+r++ +llrL+nd Ldl+rie+g
CP000967_3 586 ----------RSYTESIRRAGAHLLRLVNDALDLARIESG 615

CP000967_3039: domain 1 of 1, from 807 to 872: score 85.0, E = 1.2e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla+l HE RTP+t+++g++elLl+ t+l+++q
CP000967_3 807 AKSHFLATLGHEVRTPMTGVLGMSELLLA---------TPLNAKQ-- 842

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++ i++++ +llrL+nd Ldl+rieag
CP000967_3 843 ----------RSHVDAIRNAGTHLLRLVNDALDLARIEAG 872

CP000967_3040: domain 1 of 1, from 810 to 875: score 84.1, E = 2.1e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++fla+l HE RTP+t+++g++elLl t+l+ q
CP000967_3 810 AKTRFLATLGHEVRTPMTGVLGMSELLLQ---------TPLDGRQ-- 845

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y + i+ ++++llrL+nd Ldl+rieag
CP000967_3 846 ----------QGYASAIQLAGKHLLRLVNDALDLARIEAG 875

CP000967_4604: domain 1 of 1, from 68 to 133: score 83.9, E = 2.3e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+efla++sHE+RTPL++I+ ++el+ + ls +q
CP000967_4 68 AKGEFLATMSHEIRTPLNGIIPMLELISS---------GQLSLDQ-- 103

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l+t+ +++ +llr+++d+Ld+s++ea+
CP000967_4 104 ----------RDMLQTATSSSLQLLRIVDDILDYSKLEAN 133

CP000967_4115: domain 1 of 1, from 209 to 273: score 81.0, E = 1.6e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHELRTPLt++ gy+++L ++ +e
CP000967_4 209 VRRDFVANVSHELRTPLTVVHGYLDMLDP---------EDFPESG-- 244

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l ++++++r+ +L++dlL+lsr+e++
CP000967_4 245 -----------PMLAEMRKQSQRMAQLVEDLLTLSRLESQ 273

CP000967_3933: domain 1 of 1, from 209 to 275: score 76.6, E = 2.8e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +ef a++sHELRTPL++Irg++elLl+ +++l+e+
CP000967_3 209 RDREFNADVSHELRTPLAVIRGATELLLT--------RPNLDEKV-- 245

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l++i+r+ +++++Li lL lsr e g
CP000967_3 246 ----------LQRLQRIQRAEQQCSDLIGSLLLLSRNERG 275

CP000967_2205: domain 1 of 1, from 746 to 812: score 67.0, E = 1.5e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+efla+lsHELRTPL+aI+g + l++ e++e+++l
CP000967_2 746 VKDEFLATLSHELRTPLNAILGWSRLMQS----------EMTEPTHL 782

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ l +i+r+a+ ++i+dlLd+s i +g
CP000967_2 783 GRG----------LVIIERSARAQTQIIDDLLDMSAILSG 812

CP000967_1464: domain 1 of 1, from 315 to 381: score 66.8, E = 1.7e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f a+l+HE+R+PLtaI +++lL+e +++ ++ +
CP000967_1 315 AMGRFSASLAHEIRNPLTAICYASQLLEE--------SPDIGDAD-- 351

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l++i+++ +r + +++ +L l+r e
CP000967_1 352 ----------RRLLQIIHQQCQRTNGIVESVLALARRERA 381

CP000967_4473: domain 1 of 1, from 298 to 364: score 64.5, E = 7.4e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+efla+lsHELRTPLt+I+g +elLl +++ +++ + +
CP000967_4 298 LKDEFLATLSHELRTPLTTILGWSELLLQRVE-----EGHTTYKG-- 337

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++i ++a+ rLi+d+Ldls + g
CP000967_4 338 -------------LSVIASSARAQKRLISDMLDLSSMLLG 364

CP000967_1011: domain 1 of 1, from 652 to 720: score 63.7, E = 1.3e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s +l+++sH+LR PL++++g a+ L ++ +++++ +r
CP000967_1 652 LRSALLSSVSHDLRSPLASMIGSASSLASYG-------DAMDAHDR- 690

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l+ti+ e+erl+r i++lLd++r+++
CP000967_1 691 ----------HSLLDTIQLEGERLDRYIQNLLDMTRLGHT 720

CP000967_4795: domain 1 of 1, from 784 to 850: score 63.6, E = 1.3e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fla++sH+ +PL+a r++a++L+e ++++ e++
CP000967_4 784 SKTRFLAAISHDVLQPLNAARLFASALRE---------SHQNNEEQ- 820

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + e+++ +++ ++L++ lLd sr++ag
CP000967_4 821 ----------RHLAERVDASLRAAEELLDGLLDVSRLDAG 850

CP000967_1089: domain 1 of 1, from 195 to 261: score 55.8, E = 2.3e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f++++sHELRTPLt+Ir +++++l+ d+els +
CP000967_1 195 RERNFTRDASHELRTPLTVIRVASDMALA--------DDELSTRT-- 231

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l++i+r+++ +++ i+ +L l+r +
CP000967_1 232 ----------QRSLRRIQRAGHEMEAVIDAFLILAREAEV 261

CP000967_0292: domain 1 of 1, from 116 to 175: score 54.9, E = 4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+s l +l+HELR+PL++++g+a+lL +++ + ++e++
CP000967_0 116 ALSAALKGLAHELRNPLAGLKGAAQLLARRS-------AGRDEDE-- 153

peLRledpeyreyletilreaerllrLindlL<-*
re+le i e+erl+ L+++lL
CP000967_0 154 ----------RELLELIGTEIERLNTLLERLL 175

CP000967_4021: domain 1 of 1, from 516 to 581: score 54.1, E = 6.9e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+a++ H+L +PL+a r+++++L+ + ++
CP000967_4 516 YKTRFVASAVHDLLQPLNAARMFVSVLRG---------QVHDAGS-- 551

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++ i+ ++ ++++n lLd+sr+eag
CP000967_4 552 ----------ARVVDNIDGALAAQDAILNSLLDISRLEAG 581

CP000967_1430: domain 1 of 1, from 176 to 240: score 52.0, E = 2.7e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ a+l+HELRTPL+a +g ++ +l+e++ ++ +eq
CP000967_1 176 ELRDSSAMLAHELRTPLNAAMGRVQGMLDEVF-------PREPEQ-- 213

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+ ++r++e+++rLi dl s ++ag
CP000967_1 214 -------------LRLVHRQLEQINRLIGDLHLVSLARAG 240

CP000967_4029: domain 1 of 1, from 242 to 307: score 51.8, E = 3e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+a ++H++RTPL+a+r+ a+l+ + + ++ ++
CP000967_4 242 TLRAFMAEAAHQMRTPLAALRAQAQLAMD----------DDDPREM- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l i+r a +++rL+n+lL + +
CP000967_4 278 ----------QRSLVAIERNASHMSRLLNQLLSDASVTHR 307

CP000967_3952: domain 1 of 1, from 235 to 300: score 51.4, E = 3.8e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+a+++HELRTP++a++ +a L+ ++++e+r
CP000967_3 235 RERRFIADAAHELRTPIAALKVHAANLRL----------AANAEER- 270

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e + ++ + r++r+i +lL lsr ea
CP000967_3 271 ----------DESQQQLDANVLRIERMIAQLLALSRVEAV 300

CP000967_0914: domain 1 of 1, from 368 to 436: score 48.1, E = 3.3e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f ++sH+LR PL + g+++ L + + +++ +e+
CP000967_0 368 ELEAFSYSVSHDLRAPLRHVAGFSDKLAR-------HLGDAADEKS- 406

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r y e+i ++a+r+ +Li+dlL +sr++ g
CP000967_0 407 ----------RHYMEVISSSARRMASLIDDLLVYSRLGRG 436

CP000967_1270: domain 1 of 1, from 202 to 268: score 47.7, E = 4.2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f+ ++sHELRTP+++I ++el+l+ ++ +++ +
CP000967_1 202 RERAFIDSASHELRTPIAVIGNAVELALD---------QPGTPPAV- 238

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l++i + + + ++Li lL l++
CP000967_1 239 ----------RHQLQRIAQTSASVEQLITLLLVLAKDPGR 268

CP000967_1347: domain 1 of 1, from 15 to 80: score 45.1, E = 2.3e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ l +l HE++ PL++Ir ++elL e + +e +r
CP000967_1 15 YVVQYLQSLTHEMKRPLAVIRSASELLTE----------PVPETDR- 50

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ +i+ + +rl + i+ lL l+ e+
CP000967_1 51 ----------QHFVASIRAQEQRLTETIDKLLALAEVEQH 80

CP000967_2118: domain 1 of 1, from 131 to 201: score 42.7, E = 1.1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++a+++HE ++PL+aI + +++++l ++ ++ ++
CP000967_2 131 SMGGLAASIAHEVNQPLAAIVTSGNACQRWL--------AQQPPNLA 169

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +le++l +a r +++i +++ l+r ea
CP000967_2 170 KA--------DAALERMLADAGRASAIIARMRALARGEAS 201

CP000967_0575: domain 1 of 1, from 268 to 334: score 41.5, E = 2.4e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a+++HE+R+P++++r+++e + + ++++++
CP000967_0 268 ALGRMTATVAHEIRNPIATMRLALENEIA--------RRDATPDD-- 304

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e +l +++rl+ ++ lL + +
CP000967_0 305 ----------AAHGELMLGQIRRLDGVVESLLGMVQPIRL 334

CP000967_0438: domain 1 of 1, from 10 to 71: score 38.4, E = 1.9e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+a++sH LRTPL+++r+ +e+L++ + +
CP000967_0 10 ALGAFMADISHALRTPLAVLRAELEALQD---------SVGPMTP-- 45

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + ++ +Li+dl d s + g
CP000967_0 46 --------------NSLGSLHQQVGQLIEDLYDVSLTDVG 71

CP000967_0234: domain 1 of 1, from 182 to 247: score 33.5, E = 4.5e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ef+ l+H+LR+PL ++ + +++L + l+
CP000967_0 182 LREEFIGILAHDLRNPLQSMHAVVDVLSI---------DQLNQHY-- 217

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++r+++r+++Li+ d++r +
CP000967_0 218 ----------GGSIRSMQRSLRRMEELIDFACDFARGIER 247

CP000967_0972: domain 1 of 1, from 292 to 349: score 28.6, E = 1.1e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++a+++H+LRTPL+ +++ ++ L+
CP000967_0 292 ERTHMVAAIAHDLRTPLARLSFRLDGLQP------------------ 320

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++l +++ + ++i+ L + ++
CP000967_0 321 -----------PLRDKALADIDEMKAMISAALHFIHNDSH 349

CP000967_3288: domain 1 of 1, from 127 to 197: score 28.1, E = 1.6e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++ +++H++++ L +++g++e++++ a+ ++ ++e +
CP000967_3 127 ALGQLTGGIAHDFNNLLQVMSGHLEVIQM-----MASAGAGNAERI- 167

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e + +a L ++lL +sr +
CP000967_3 168 ----------AFSAEHAAAAAAKAATLTQQLLAFSRKQKL 197


Histogram of all scores:
score obs exp (one = represents 16 sequences)
----- --- ---
-14 53 0|====
-13 140 3|*========
-12 362 114|=======*===============
-11 546 591|=================================== *
-10 832 1096|==================================================== *
-9 931 1132|==========================================================*
-8 758 848|================================================ *
-7 567 534|=================================*==
-6 318 307|===================*
-5 201 168|==========*==
-4 116 90|=====*==
-3 54 47|==*=
-2 38 25|=*=
-1 14 13|*
0 9 6|*
1 5 3|*
> 2 44 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 676.5261
P(chi-square) = 0

Total sequences searched: 4988

Whole sequence top hits:
tophits_s report:
Total hits: 28
Satisfying E cutoff: 28
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 28
Satisfying E cutoff: 28
Total memory: 32K


Acknowledgements:

This research is funded by:

Developed by: