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Thermotogae
Classification of phyla is from NCBI page
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264 projects found  

1 accessions found for Xanthomonas oryzae pv. oryzae PXO99A  

Data for CP000967  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP000967.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000967_1278 CDS_1301521-1302657 72.3 6.3e-21 1
CP000967_2476 CDS_2585611-2587743 61.6 8.7e-18 1
CP000967_2667 CDS_2797698-2799830 61.6 8.7e-18 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000967_1278 1/1 179 243 .. 1 70 [] 72.3 6.3e-21
CP000967_2476 1/1 504 569 .. 1 70 [] 61.6 8.7e-18
CP000967_2667 1/1 504 569 .. 1 70 [] 61.6 8.7e-18

Alignments of top-scoring domains:
CP000967_1278: domain 1 of 1, from 179 to 243: score 72.3, E = 6.3e-21
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+RI+RELHD +g++L+a++l le+a +++ ++a+e+++++
CP000967_1 179 ERTRISRELHDLLGHHLTALSLNLEVAGHIT-----EGQAQEHVRQA 220

relarealaevRrllgdLRpaal<-*
++la+ l++vR+++++LR+++
CP000967_1 221 HTLAKLLLTDVREAVSHLRDSGA 243

CP000967_2476: domain 1 of 1, from 504 to 569: score 61.6, E = 8.7e-18
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+ I+R+LHD +gQ+++a+kl +++a+ d + d+e+ re + e+
CP000967_2 504 ERRAISRDLHDDIGQAITAMKLSAHAAL---D-EQDAEARREDMLEV 546

relarealaevRrllgdLRpaal<-*
la+ + + +R+l LRp++l
CP000967_2 547 VSLADSTVTKLRNLSMLLRPPQL 569

CP000967_2667: domain 1 of 1, from 504 to 569: score 61.6, E = 8.7e-18
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+ I+R+LHD +gQ+++a+kl +++a+ d + d+e+ re + e+
CP000967_2 504 ERRAISRDLHDDIGQAITAMKLSAHAAL---D-EQDAEARREDMLEV 546

relarealaevRrllgdLRpaal<-*
la+ + + +R+l LRp++l
CP000967_2 547 VSLADSTVTKLRNLSMLLRPPQL 569


Histogram of all scores:
score obs exp (one = represents 13 sequences)
----- --- ---
-15 1 0|=
-14 29 0|===
-13 133 0|===========
-12 175 55|====*=========
-11 237 457|=================== *
-10 626 1060|================================================= *
-9 755 1204|==========================================================*
-8 735 928|========================================================= *
-7 571 583|============================================*
-6 633 330|=========================*=======================
-5 484 177|=============*========================
-4 228 92|=======*==========
-3 131 47|===*=======
-2 80 24|=*=====
-1 65 12|*====
0 35 6|*==
1 22 3|*=
2 13 1|*
3 10 0|=
4 7 0|=
5 6 0|=
6 2 0|=
7 2 0|=
8 1 0|=
9 1 0|=
> 10 6 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 2383.9443
P(chi-square) = 0

Total sequences searched: 4988

Whole sequence top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: