Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
11 projects found  

1 accessions found for Thermotoga sp. RQ2  

Data for CP000969  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000969.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000969_1157 CDS_1210691-1211929 96.5 2.4e-27 1
CP000969_0074 CDS_67327-65849 87.3 9.4e-25 1
CP000969_1452 CDS_1480127-1477860 60.0 5.1e-17 1
CP000969_0526 CDS_535000-533783 56.5 5.2e-16 1
CP000969_1536 CDS_1571044-1571997 41.6 8.7e-12 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000969_1157 1/1 185 252 .. 1 87 [] 96.5 2.4e-27
CP000969_0074 1/1 253 321 .. 1 87 [] 87.3 9.4e-25
CP000969_1452 1/1 537 603 .. 1 87 [] 60.0 5.1e-17
CP000969_0526 1/1 192 258 .. 1 87 [] 56.5 5.2e-16
CP000969_1536 1/1 104 169 .. 1 87 [] 41.6 8.7e-12

Alignments of top-scoring domains:
CP000969_1157: domain 1 of 1, from 185 to 252: score 96.5, E = 2.4e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ef+a++sHELRTPLt+I gyae+Lle ++l +++
CP000969_1 185 MRREFIATVSHELRTPLTSIHGYAETLLE---------DDLENKEL- 221

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++l++i++e+ r+ rLindlLdl+++e+
CP000969_1 222 ---------VKRFLKIIEEESARMTRLINDLLDLEKMEES 252

CP000969_0074: domain 1 of 1, from 253 to 321: score 87.3, E = 9.4e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ef+an+sHELRTPLtaI++yae+ + l +el+ ++
CP000969_0 253 MKTEFIANISHELRTPLTAIKAYAETVYNSL-------EELDLSTL- 291

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+le+i++++++l++L+n+lLd+sr+e
CP000969_0 292 ----------KEFLEVIIDQSNHLENLLNELLDFSRLERK 321

CP000969_1452: domain 1 of 1, from 537 to 603: score 60.0, E = 5.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++a ++HE+R+P+t I g++ +++ + ++e++
CP000969_1 537 ILGEMTARVAHEIRNPITIIGGFIMRMKK---------HLDDPETL- 573

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y+++i +e+ rl+ ++ ++L++s+ ++
CP000969_1 574 ----------KKYINIITNELSRLETIVKEILEYSKERQV 603

CP000969_0526: domain 1 of 1, from 192 to 258: score 56.5, E = 5.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f ++sHEL+TPL+++r+ +++L+ +++l+++
CP000969_0 192 SLKRFSMDASHELKTPLSVLRTSLDVLKY--------REDLPDDV-- 228

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l ++++ +e ++++in+lL l + e+
CP000969_0 229 ----------KNKLGIMEKNVEKMSKQINQLLLLVKSESS 258

CP000969_1536: domain 1 of 1, from 104 to 169: score 41.6, E = 8.7e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak +f+ ++sHEL TPL+a ++++ lL++ e ++e+
CP000969_1 104 AKLDFVTAVSHELFTPLSASKANVFLLKD---------IENDPEK-- 139

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+l +++r+++r++ +i++l l+ i+
CP000969_1 140 ----------LEILGKVERSLDRMETIIRQLKVLTMIQLR 169


Histogram of all scores:
score obs exp (one = represents 6 sequences)
----- --- ---
-14 1 0|=
-13 13 1|*==
-12 82 41|======*=======
-11 180 215|============================== *
-10 317 400|===================================================== *
-9 344 413|==========================================================*
-8 305 309|===================================================*
-7 217 194|================================*====
-6 128 112|==================*===
-5 88 61|==========*====
-4 56 32|=====*====
-3 37 17|==*====
-2 16 9|=*=
-1 9 4|*=
0 9 2|*=
1 3 1|*
2 0 0|
3 0 0|
4 3 0|=
5 0 0|
6 4 0|=
> 7 7 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 133.5837
P(chi-square) = 8.665e-24

Total sequences searched: 1819

Whole sequence top hits:
tophits_s report:
Total hits: 5
Satisfying E cutoff: 5
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 5
Satisfying E cutoff: 5
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: