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264 projects found  

5 accessions found for Escherichia coli SMS-3-5  

Data for CP000970  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000970.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000970_2831 CDS_2998309-3001065 100.1 5.7e-28 1
CP000970_0416 CDS_440164-441459 91.0 2.3e-25 1
CP000970_2446 CDS_2575404-2578787 81.6 1e-22 1
CP000970_2065 CDS_2140482-2143184 81.1 1.4e-22 1
CP000970_2295 CDS_2403473-2400624 80.6 2e-22 1
CP000970_3365 CDS_3579638-3577302 78.9 6.1e-22 1
CP000970_2628 CDS_2786298-2784871 75.4 5.9e-21 1
CP000970_2296 CDS_2403640-2405466 73.6 1.9e-20 1
CP000970_0944 CDS_992070-990667 69.8 2.3e-19 1
CP000970_4132 CDS_4407402-4406029 66.6 1.8e-18 1
CP000970_4740 CDS_5063433-5064857 62.4 2.8e-17 1
CP000970_4271 CDS_4546451-4547827 61.5 5.1e-17 1
CP000970_0568 CDS_597379-595937 61.0 7.1e-17 1
CP000970_3177 CDS_3392340-3393689 60.7 8.8e-17 1
CP000970_4082 CDS_4351083-4350034 59.7 1.7e-16 1
CP000970_0689 CDS_723650-720966 59.6 1.7e-16 1
CP000970_3535 CDS_3743473-3742121 55.0 3.5e-15 1
CP000970_1161 CDS_1221247-1222605 52.3 2e-14 1
CP000970_4388 CDS_4678233-4677133 45.0 2.4e-12 1
CP000970_1528 CDS_1579607-1578306 42.4 1.4e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000970_2831 1/1 292 357 .. 1 87 [] 100.1 5.7e-28
CP000970_0416 1/1 203 269 .. 1 87 [] 91.0 2.3e-25
CP000970_2446 1/1 641 707 .. 1 87 [] 81.6 1e-22
CP000970_2065 1/1 433 498 .. 1 87 [] 81.1 1.4e-22
CP000970_2295 1/1 469 534 .. 1 87 [] 80.6 2e-22
CP000970_3365 1/1 282 347 .. 1 87 [] 78.9 6.1e-22
CP000970_2628 1/1 249 317 .. 1 87 [] 75.4 5.9e-21
CP000970_2296 1/1 388 453 .. 1 87 [] 73.6 1.9e-20
CP000970_0944 1/1 240 304 .. 1 87 [] 69.8 2.3e-19
CP000970_4132 1/1 238 300 .. 1 87 [] 66.6 1.8e-18
CP000970_4740 1/1 255 320 .. 1 87 [] 62.4 2.8e-17
CP000970_4271 1/1 237 303 .. 1 87 [] 61.5 5.1e-17
CP000970_0568 1/1 261 327 .. 1 87 [] 61.0 7.1e-17
CP000970_3177 1/1 236 302 .. 1 87 [] 60.7 8.8e-17
CP000970_4082 1/1 129 186 .. 1 79 [. 59.7 1.7e-16
CP000970_0689 1/1 663 730 .. 1 87 [] 59.6 1.7e-16
CP000970_3535 1/1 233 293 .. 1 87 [] 55.0 3.5e-15
CP000970_1161 1/1 235 301 .. 1 87 [] 52.3 2e-14
CP000970_4388 1/1 145 205 .. 1 87 [] 45.0 2.4e-12
CP000970_1528 1/1 211 271 .. 1 87 [] 42.4 1.4e-11

Alignments of top-scoring domains:
CP000970_2831: domain 1 of 1, from 292 to 357: score 100.1, E = 5.7e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g++ l l+ tel++ q
CP000970_2 292 IKSEFLANMSHELRTPLNGVIGFTRLTLK---------TELTPTQ-- 327

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+ti+r+a+ ll++ind+Ld+s++eag
CP000970_2 328 ----------RDHLNTIERSANNLLAIINDVLDFSKLEAG 357

CP000970_0416: domain 1 of 1, from 203 to 269: score 91.0, E = 2.3e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+an+sHELRTPLt+++gy+e++ e ++l r
CP000970_0 203 ARRNFFANVSHELRTPLTVLQGYLEMMDE---------QPLEGAVR- 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+t++++++r++ L+ +lL+ls+iea
CP000970_0 240 ----------EKALHTMREQTQRMEGLVKQLLTLSKIEAA 269

CP000970_2446: domain 1 of 1, from 641 to 707: score 81.6, E = 1e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHE+RTP+++I+g++elL + ls eqr
CP000970_2 641 AKSQFLATMSHEIRTPISSIMGFLELLSG---------SGLSKEQR- 677

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+++ ++ +++ll Li ++Ld +ie+g
CP000970_2 678 ----------VEAISLAYATGQSLLGLIGEILDVDKIESG 707

CP000970_2065: domain 1 of 1, from 433 to 498: score 81.1, E = 1.4e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTPL +I+g+a+lL + ++ q
CP000970_2 433 AKSAFLAAMSHEIRTPLYGILGTAQLLAD---------NPALNTQ-- 468

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+ i +++e+ll ++nd+Ld+s ieag
CP000970_2 469 ----------RDDLRAITDSGESLLTILNDILDYSAIEAG 498

CP000970_2295: domain 1 of 1, from 469 to 534: score 80.6, E = 2e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks fla++sHELRTPL +I+g+++lL++ el+
CP000970_2 469 SKSMFLATVSHELRTPLYGIIGNLDLLQT---------KELPKGV-- 504

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + +++ ll++i+d+Ld+s+ie++
CP000970_2 505 ----------DRLVTAMNNSSSLLLKIISDILDFSKIESE 534

CP000970_3365: domain 1 of 1, from 282 to 347: score 78.9, E = 6.1e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ f++++sHELRTPL++I g++ +Ll+ tel++eq
CP000970_3 282 DKTTFISTISHELRTPLNGIVGLSRILLD---------TELTAEQ-- 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+ti+ +a l ++ nd+ d+ ++e
CP000970_3 318 ----------EKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

CP000970_2628: domain 1 of 1, from 249 to 317: score 75.4, E = 5.9e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +fl++lsHEL+TPL+++r +elL +++ ++l++eq
CP000970_2 249 QRHQFLRHLSHELKTPLASMREGTELLADQV------VGPLTPEQ-- 287

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e +++++++++ l++Li++lLd+ r +a
CP000970_2 288 ----------KEVVSILDSSSRNLQKLIEQLLDYNRKQAD 317

CP000970_2296: domain 1 of 1, from 388 to 453: score 73.6, E = 1.9e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++a+++HE R+PLtaIrgy+++L+ ++ + +
CP000970_2 388 TLGELMAGVAHEVRNPLTAIRGYVQILRQ---------QTSDLIH-- 423

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+eyl+++l+e++++++ i++lL++sr ++
CP000970_2 424 ----------QEYLSVVLKEIDSINKVIQQLLEFSRPRHS 453

CP000970_0944: domain 1 of 1, from 240 to 304: score 69.8, E = 2.3e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a++sHELRTPL+++rg +e++++++ + ++e+
CP000970_0 240 MRRDFMADISHELRTPLAVLRGELEAIQDGV-------RKFTPET-- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ e+ l +L++dl +ls ++g
CP000970_0 278 -------------VASLQAEVGTLTKLVDDLHQLSMSDEG 304

CP000970_4132: domain 1 of 1, from 238 to 300: score 66.6, E = 1.8e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++l+++sHELRTPLt +++ + lL++ +++
CP000970_4 238 SQQRLLSDISHELRTPLTRLQLGTALLRR---------RSGESKE-- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+i+ ea+rl+++indlL +sr ++
CP000970_4 274 -------------LERIETEAQRLDSMINDLLVMSRNQQK 300

CP000970_4740: domain 1 of 1, from 255 to 320: score 62.4, E = 2.8e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + +l HEL+ PL+aIrg+ae+L+e ++ +e
CP000970_4 255 YIEQYVYALTHELKSPLAAIRGAAEILRE---------GPPPEVV-- 290

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ il + r+++L++ lL +r+e+
CP000970_4 291 ----------ARFTDNILTQNARMQALVETLLRQARLENR 320

CP000970_4271: domain 1 of 1, from 237 to 303: score 61.5, E = 5.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ ++a+++HE+R+PL++I+g+a+ e +++++ e
CP000970_4 237 ALGHLAAGVAHEIRNPLSSIKGLAKYFAE--------RAPAGGEA-- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +++ +ea+rl+r +++lL+l + +
CP000970_4 274 ----------HQLAQVMAKEADRLNRVVSELLELVKPTHL 303

CP000970_0568: domain 1 of 1, from 261 to 327: score 61.0, E = 7.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s f a+++HE+RTP+t +++ +e++l + +s +++
CP000970_0 261 RQSNFSADIAHEIRTPITNLITQTEIALS---------QSRSQKEL- 297

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l + l+e+ r+ ++++d+L l++++++
CP000970_0 298 ----------EDVLYSNLEELTRMAKMVSDMLFLAQADNN 327

CP000970_3177: domain 1 of 1, from 236 to 302: score 60.7, E = 8.8e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+++++HELR PLta++ +e+++ ++ +++ r
CP000970_3 236 RERRFTSDAAHELRSPLTALKVQTEVAQL---------SDDDPQAR- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l +++ ++r rL+++lL+lsr+++
CP000970_3 273 ----------KKALLQLHSGIDRATRLVDQLLTLSRLDSL 302

CP000970_4082: domain 1 of 1, from 129 to 186: score 59.7, E = 1.7e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++++l+HE+++PL ++rg+a+lL + +l+++ +
CP000970_4 129 AARDLVRGLAHEIKNPLGGLRGAAQLLSK----------ALPDPSL- 164

peLRledpeyreyletilreaerllrLindlL<-*
ey+++i+++a+rl++L+++lL
CP000970_4 165 ----------LEYTKVIIEQADRLRNLVDRLL 186

CP000970_0689: domain 1 of 1, from 663 to 730: score 59.6, E = 1.7e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la+lsH+LRTPLt++ g ae+L +l + ++++
CP000970_0 663 IRNALLAALSHDLRTPLTVLFGQAEILTLDL-------ASEGSPH-- 700

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + i++ + rL+n+lLd++ri++g
CP000970_0 701 ----------ARQASEIRQHVLNTTRLVNNLLDMARIQSG 730

CP000970_3535: domain 1 of 1, from 233 to 293: score 55.0, E = 3.5e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++a++sH+LRTPLt Ir+++e++ e ++
CP000970_3 233 DRTLLMAGVSHDLRTPLTRIRLATEMMSE---------QD------- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e+i +++e ++++i+++ d+ r +++
CP000970_3 264 ----------GYLAESINKDIEECNAIIEQFIDYLRTGQE 293

CP000970_1161: domain 1 of 1, from 235 to 301: score 52.3, E = 2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f+ +l+HELRTP++a++g ++ l +++s +
CP000970_1 235 RLSQFADDLAHELRTPINALLGQNQVTLS---------QTRSIAE-- 270

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y++ + ++e+e ++rL +++L l+r++ +
CP000970_1 271 ---------YQKTIAGNIEELENISRLTENILFLARADKN 301

CP000970_4388: domain 1 of 1, from 145 to 205: score 45.0, E = 2.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f+a+++HELRTPL+++r+++elL + t+
CP000970_4 145 NERLFTADVAHELRTPLAGVRLHLELLAK---------TH------- 175

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + ++++ + +++lL+l+r+++
CP000970_4 176 ----------HIDVAPLVARLDQMMESVSQLLQLARAGQS 205

CP000970_1528: domain 1 of 1, from 211 to 271: score 42.4, E = 1.4e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k +++ +++HELRTPL +r +e+ + ls+ +
CP000970_1 211 SKKQLIDGIAHELRTPLVRLRYRLEMSDN-----------LSAAE-- 244

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + r++ +l++Li++lL+++r++ +
CP000970_1 245 -------------SQALNRDISQLEALIEELLTYARLDRP 271


Histogram of all scores:
score obs exp (one = represents 15 sequences)
----- --- ---
-16 1 0|=
-15 2 0|=
-14 47 0|====
-13 107 3|*=======
-12 265 108|=======*==========
-11 499 562|================================== *
-10 792 1043|===================================================== *
-9 865 1077|==========================================================*
-8 751 806|=================================================== *
-7 564 508|=================================*====
-6 357 292|===================*====
-5 207 160|==========*===
-4 104 85|=====*=
-3 65 45|==*==
-2 34 23|=*=
-1 30 12|*=
0 15 6|*
1 5 3|*
2 9 1|*
3 1 0|=
4 1 0|=
> 5 22 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 425.8200
P(chi-square) = 0

Total sequences searched: 4743

Whole sequence top hits:
tophits_s report:
Total hits: 20
Satisfying E cutoff: 20
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 20
Satisfying E cutoff: 20
Total memory: 28K


Acknowledgements:

This research is funded by:

Developed by: