Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
19 projects found  

8 accessions found for Borrelia recurrentis A1  

Data for CP000993  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000993.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000993_0395 CDS_455769-451324 76.9 3.6e-22 1
CP000993_0719 CDS_828937-827777 36.7 9.2e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000993_0395 1/1 756 821 .. 1 87 [] 76.9 3.6e-22
CP000993_0719 1/1 152 222 .. 1 87 [] 36.7 9.2e-11

Alignments of top-scoring domains:
CP000993_0395: domain 1 of 1, from 756 to 821: score 76.9, E = 3.6e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ fla++sH++RTP+++I++++elL + t+l q
CP000993_0 756 AKTIFLASMSHDIRTPINGIIAATELLDN---------TDLLGVQ-- 791

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ey++ i ++ +ll+Li+++L +s+i+ +
CP000993_0 792 ----------KEYVQMINYSSTSLLSLIDEILYISKIDMN 821

CP000993_0719: domain 1 of 1, from 152 to 222: score 36.7, E = 9.2e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++ ++n++HE+++PL aI +++lL++e dk +s ++
CP000993_0 152 AFTRHARNIAHEIKNPLGAIDINLQLLKKEIDK----QNIKSTKT-- 192

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+++i++e++r+++ + d+L r
CP000993_0 193 ----------NHYFKIIKEEINRMDKTVTDFLLTVRPIKI 222


Histogram of all scores:
score obs exp (one = represents 3 sequences)
----- --- ---
-14 2 0|=
-13 10 0|====
-12 39 18|=====*=======
-11 83 94|============================ *
-10 120 175|======================================== *
-9 141 181|=============================================== *
-8 152 136|=============================================*=====
-7 109 85|============================*========
-6 44 49|=============== *
-5 50 27|========*========
-4 26 14|====*====
-3 7 7|==*
-2 8 4|=*=
-1 3 2|*
0 1 1|*
1 1 0|=
2 0 0|
3 0 0|
4 1 0|=
5 0 0|
> 6 3 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 89.2505
P(chi-square) = 2.301e-15

Total sequences searched: 800

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: