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Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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132 projects found  

9 accessions found for Methylobacterium radiotolerans JCM 2831  

Data for CP001001  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001001.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001001_1717 CDS_1861849-1860314 95.8 1.1e-26 1
CP001001_2054 CDS_2215046-2217775 94.0 3.8e-26 1
CP001001_2361 CDS_2548539-2546509 92.6 9.5e-26 1
CP001001_3163 CDS_3388870-3394680 89.4 7.5e-25 1
CP001001_0212 CDS_221408-224332 87.4 2.7e-24 1
CP001001_2127 CDS_2302649-2300259 87.1 3.5e-24 1
CP001001_3632 CDS_3919128-3915754 86.6 4.7e-24 1
CP001001_3537 CDS_3815234-3813963 86.0 7e-24 1
CP001001_1735 CDS_1881444-1877971 85.8 7.9e-24 2
CP001001_2629 CDS_2819147-2816172 82.9 5.1e-23 1
CP001001_4602 CDS_4965187-4963295 81.1 1.7e-22 1
CP001001_2337 CDS_2511588-2513969 80.9 2e-22 1
CP001001_4735 CDS_5129752-5127020 77.3 2.1e-21 1
CP001001_0505 CDS_558955-557309 71.5 8.8e-20 1
CP001001_0204 CDS_215059-212342 70.4 1.8e-19 1
CP001001_0726 CDS_784594-787182 68.9 5e-19 1
CP001001_1418 CDS_1516250-1514604 68.1 8.3e-19 1
CP001001_5431 CDS_5827234-5830608 67.4 1.3e-18 2
CP001001_3043 CDS_3265566-3263761 63.4 1.8e-17 1
CP001001_2927 CDS_3126894-3128648 61.4 6.4e-17 1
CP001001_3469 CDS_3733007-3734353 59.9 1.7e-16 1
CP001001_5152 CDS_5542508-5540340 59.0 3.1e-16 1
CP001001_2978 CDS_3181857-3184295 57.6 7.5e-16 1
CP001001_4326 CDS_4655126-4652286 57.5 8.3e-16 1
CP001001_5157 CDS_5546057-5549731 56.2 1.9e-15 1
CP001001_3002 CDS_3214902-3212458 55.9 2.4e-15 1
CP001001_5163 CDS_5554984-5557824 55.4 3.3e-15 1
CP001001_2076 CDS_2240345-2243389 54.2 7.1e-15 1
CP001001_4207 CDS_4518497-4515267 53.2 1.4e-14 1
CP001001_2137 CDS_2311965-2310823 52.5 2.1e-14 1
CP001001_5162 CDS_5552538-5554454 51.5 4.3e-14 1
CP001001_5150 CDS_5539611-5537500 50.5 7.9e-14 1
CP001001_3224 CDS_3466343-3469378 50.0 1.1e-13 1
CP001001_3226 CDS_3471224-3472804 48.7 2.6e-13 1
CP001001_3433 CDS_3696176-3694668 47.7 5e-13 1
CP001001_1459 CDS_1556489-1558933 46.7 9.6e-13 1
CP001001_3239 CDS_3487433-3489187 46.5 1.1e-12 1
CP001001_2440 CDS_2635057-2633648 45.1 2.8e-12 1
CP001001_3516 CDS_3786445-3788064 44.9 3e-12 1
CP001001_3373 CDS_3634777-3636240 43.7 6.7e-12 1
CP001001_4208 CDS_4520441-4518714 43.4 8.1e-12 1
CP001001_2539 CDS_2735076-2736659 43.1 1e-11 1
CP001001_0364 CDS_402589-404451 42.9 1.1e-11 1
CP001001_2197 CDS_2365056-2362279 42.8 1.2e-11 1
CP001001_3485 CDS_3753419-3751332 40.8 4.5e-11 1
CP001001_2157 CDS_2333586-2335472 40.0 7.5e-11 1
CP001001_0387 CDS_442105-443664 39.1 1.4e-10 1
CP001001_5153 CDS_5542910-5544034 38.6 1.9e-10 1
CP001001_3421 CDS_3684228-3685622 36.7 6.5e-10 1
CP001001_5577 CDS_5991160-5989118 35.7 1.2e-09 1
CP001001_1249 CDS_1338040-1339290 33.4 5.5e-09 1
CP001001_4371 CDS_4715130-4712554 33.1 6.6e-09 1
CP001001_4303 CDS_4627828-4626437 31.3 2.2e-08 1
CP001001_1244 CDS_1329988-1332507 31.1 2.5e-08 1
CP001001_4210 CDS_4523154-4520899 31.0 2.7e-08 1
CP001001_3164 CDS_3394677-3396767 30.5 3.6e-08 1
CP001001_4648 CDS_5016589-5018175 28.3 1.6e-07 1
CP001001_2156 CDS_2331871-2333589 27.3 2.9e-07 2

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001001_1717 1/1 257 326 .. 1 87 [] 95.8 1.1e-26
CP001001_2054 1/1 273 338 .. 1 87 [] 94.0 3.8e-26
CP001001_2361 1/1 173 238 .. 1 87 [] 92.6 9.5e-26
CP001001_3163 1/1 1247 1315 .. 1 87 [] 89.4 7.5e-25
CP001001_0212 1/1 477 545 .. 1 87 [] 87.4 2.7e-24
CP001001_2127 1/1 274 342 .. 1 87 [] 87.1 3.5e-24
CP001001_3632 1/1 605 671 .. 1 87 [] 86.6 4.7e-24
CP001001_3537 1/1 181 248 .. 1 87 [] 86.0 7e-24
CP001001_1735 1/2 670 736 .. 1 87 [] 84.5 1.9e-23
CP001001_2629 1/1 495 563 .. 1 87 [] 82.9 5.1e-23
CP001001_4602 1/1 351 420 .. 1 87 [] 81.1 1.7e-22
CP001001_2337 1/1 526 595 .. 1 87 [] 80.9 2e-22
CP001001_4735 1/1 406 472 .. 1 87 [] 77.3 2.1e-21
CP001001_0505 1/1 298 364 .. 1 87 [] 71.5 8.8e-20
CP001001_0204 1/1 672 740 .. 1 87 [] 70.4 1.8e-19
CP001001_0726 1/1 595 663 .. 1 87 [] 68.9 5e-19
CP001001_1418 1/1 185 250 .. 1 87 [] 68.1 8.3e-19
CP001001_5431 1/2 671 737 .. 1 87 [] 66.9 1.8e-18
CP001001_3043 1/1 358 423 .. 1 87 [] 63.4 1.8e-17
CP001001_2927 1/1 209 275 .. 1 87 [] 61.4 6.4e-17
CP001001_3469 1/1 90 155 .. 1 87 [] 59.9 1.7e-16
CP001001_5152 1/1 348 414 .. 1 87 [] 59.0 3.1e-16
CP001001_2978 1/1 432 498 .. 1 87 [] 57.6 7.5e-16
CP001001_4326 1/1 565 631 .. 1 87 [] 57.5 8.3e-16
CP001001_5157 1/1 850 916 .. 1 87 [] 56.2 1.9e-15
CP001001_3002 1/1 432 498 .. 1 87 [] 55.9 2.4e-15
CP001001_5163 1/1 571 637 .. 1 87 [] 55.4 3.3e-15
CP001001_2076 1/1 637 703 .. 1 87 [] 54.2 7.1e-15
CP001001_4207 1/1 700 766 .. 1 87 [] 53.2 1.4e-14
CP001001_2137 1/1 142 206 .. 1 87 [] 52.5 2.1e-14
CP001001_5162 1/1 260 326 .. 1 87 [] 51.5 4.3e-14
CP001001_5150 1/1 326 392 .. 1 87 [] 50.5 7.9e-14
CP001001_3224 1/1 637 703 .. 1 87 [] 50.0 1.1e-13
CP001001_3226 1/1 295 366 .. 1 87 [] 48.7 2.6e-13
CP001001_3433 1/1 251 317 .. 1 87 [] 47.7 5e-13
CP001001_1459 1/1 543 614 .. 1 87 [] 46.7 9.6e-13
CP001001_3239 1/1 349 418 .. 1 87 [] 46.5 1.1e-12
CP001001_2440 1/1 241 299 .. 1 87 [] 45.1 2.8e-12
CP001001_3516 1/1 162 232 .. 1 87 [] 44.9 3e-12
CP001001_3373 1/1 268 333 .. 1 87 [] 43.7 6.7e-12
CP001001_4208 1/1 188 253 .. 1 87 [] 43.4 8.1e-12
CP001001_2539 1/1 296 367 .. 1 87 [] 43.1 1e-11
CP001001_0364 1/1 388 456 .. 1 87 [] 42.9 1.1e-11
CP001001_2197 1/1 502 568 .. 1 87 [] 42.8 1.2e-11
CP001001_3485 1/1 322 390 .. 1 87 [] 40.8 4.5e-11
CP001001_2157 1/1 265 331 .. 1 87 [] 40.0 7.5e-11
CP001001_0387 1/1 289 360 .. 1 87 [] 39.1 1.4e-10
CP001001_5153 1/1 144 212 .. 1 87 [] 38.6 1.9e-10
CP001001_3421 1/1 261 319 .. 1 87 [] 36.7 6.5e-10
CP001001_5577 1/1 408 495 .. 1 87 [] 35.7 1.2e-09
CP001001_1249 1/1 192 262 .. 1 87 [] 33.4 5.5e-09
CP001001_4371 1/1 484 552 .. 1 87 [] 33.1 6.6e-09
CP001001_4303 1/1 209 274 .. 1 87 [] 31.3 2.2e-08
CP001001_1244 1/1 601 671 .. 1 87 [] 31.1 2.5e-08
CP001001_4210 1/1 525 593 .. 1 87 [] 31.0 2.7e-08
CP001001_3164 1/1 322 388 .. 1 87 [] 30.5 3.6e-08
CP001001_4648 1/1 296 363 .. 1 87 [] 28.3 1.6e-07

Alignments of top-scoring domains:
CP001001_1717: domain 1 of 1, from 257 to 326: score 95.8, E = 1.1e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHELRTPL+aI+g++e++++e++ ++ +++
CP001001_1 257 AKSRFLATMSHELRTPLNAILGFSEVMKNEVF------GTHTAPS-- 295

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yrey + i++++ +ll+Lin++Ldlsrieag
CP001001_1 296 ---------YREYSHDIHDSGMHLLNLINEILDLSRIEAG 326

CP001001_2054: domain 1 of 1, from 273 to 338: score 94.0, E = 3.8e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTP+++++ +aelL ++l++ q
CP001001_2 273 AKSAFLATMSHEIRTPMNGVLVMAELLAG---------SDLPARQ-- 308

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y e+i r++++ll++ind+Ld+++ eag
CP001001_2 309 ----------RRYAEVIARSGRSLLAIINDILDFAKVEAG 338

CP001001_2361: domain 1 of 1, from 173 to 238: score 92.6, E = 9.5e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHE+RTPL++I+g+a+l l tel++eq
CP001001_2 173 AKSRFLATVSHEMRTPLNGILGMADLVLG---------TELNPEQ-- 208

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r y+e ++ +++ ll Li+ +Ld+srieag
CP001001_2 209 ----------RTYVEAVRTSGQALLGLIDGVLDFSRIEAG 238

CP001001_3163: domain 1 of 1, from 1247 to 1315: score 89.4, E = 7.5e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+flan+sHELRTPL++++ +++lL e +d++l+++q
CP001001_3 1247 YKSQFLANMSHELRTPLNSLLILSKLLSE------NRDGNLTDKQ-- 1285

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+ +ti ++ ll+Lind+Ldls+ie+g
CP001001_3 1286 ----------REFAKTINAAGTDLLSLINDILDLSKIESG 1315

CP001001_0212: domain 1 of 1, from 477 to 545: score 87.4, E = 2.7e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHELRTPL+aI+g++ l +++ + l+ +q
CP001001_0 477 AKSSFLANMSHELRTPLNAIIGFTRLVMRRAK------DVLPVKQ-- 515

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e le+il ++e+ll+Lin +Ldl++ eag
CP001001_0 516 ----------FENLEKILASSEHLLSLINSILDLAKVEAG 545

CP001001_2127: domain 1 of 1, from 274 to 342: score 87.1, E = 3.5e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+f+an+sHELRTPL+a++gy+e+L eel ++ + +
CP001001_2 274 AKSQFIANMSHELRTPLSAVIGYSEMLGEEL-------EDIGQAAL- 312

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++i+ +a++ll+Lind+Ld+s+ieag
CP001001_2 313 ----------LPDLRKIEAAARHLLSLINDVLDISKIEAG 342

CP001001_3632: domain 1 of 1, from 605 to 671: score 86.6, E = 4.7e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksefla++sHE+RTPL++I+gya+lLl++ ++ e+
CP001001_3 605 AKSEFLAAMSHEIRTPLNGILGYADLLLDG--------DAIQNED-- 641

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ le i++++ ll +nd+Ld+s+ieag
CP001001_3 642 ----------RRRLELIQSSGAALLTVVNDILDFSKIEAG 671

CP001001_3537: domain 1 of 1, from 181 to 248: score 86.0, E = 7e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+an+sHELRTPL++++g++e+L+ +++++ q++
CP001001_3 181 MRVDFVANASHELRTPLATLIGFIETLQG---------PARDDAQAR 218

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++le+++ +a+r+ rLi+dlL lsrie
CP001001_3 219 ----------ERFLEIMRVQAQRMTRLIDDLLSLSRIELR 248

CP001001_1735: domain 1 of 2, from 670 to 736: score 84.5, E = 1.9e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksefla++sHE+RTPL++++gya+lLl++ t+l++
CP001001_1 670 AKSEFLAAMSHEIRTPLNGVIGYADLLLDG--------TDLGPAA-- 706

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ ++i+ ++ ll +nd+Ld+s+ eag
CP001001_1 707 ----------RRNADRIRTAGAALLTVVNDVLDFSKVEAG 736

CP001001_2629: domain 1 of 1, from 495 to 563: score 82.9, E = 5.1e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+flan+sHELRTPL+a++gy+e+ +eel ++ +e ++
CP001001_2 495 AKSQFLANMSHELRTPLSAVIGYSEMVQEEL-------EDIGEADL- 533

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++i+ a++ll Lind+Ld+s+iea
CP001001_2 534 ----------VTDMKKIETNARHLLGLINDVLDISKIEAD 563

CP001001_4602: domain 1 of 1, from 351 to 420: score 81.1, E = 1.7e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++flan+ HELRTPL+aI+g++e+L e+ l++ q+
CP001001_4 351 IKGRFLANVTHELRTPLNAIIGFSEVLAGEGA------VSLGPVQA- 390

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey +i ++++ll +n lLd+sri++g
CP001001_4 391 ----------REYAGIIGASGHHLLGVVNTLLDMSRIQSG 420

CP001001_2337: domain 1 of 1, from 526 to 595: score 80.9, E = 2e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak eflan+sHELRTPL+aI+g+a+++++ + l++ +
CP001001_2 526 AKAEFLANMSHELRTPLNAIIGFADVMEN---------AVLGPLGT- 562

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
p y ey + i++++ +ll++i+d+Ld++r+ea
CP001001_2 563 -------PRYTEYCRDIRESGSHLLSMIDDILDMARLEAR 595

CP001001_4735: domain 1 of 1, from 406 to 472: score 77.3, E = 2.1e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+efl+++sHE+RTPL+a++g+a lL e ++ l+ +
CP001001_4 406 AKTEFLSAMSHEIRTPLNAVIGFAGLLAE--------SGRLDGDL-- 442

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y e + ++ l+ ++d+Ld+s eag
CP001001_4 443 ----------RRYAELAATAGANLRTVVDDILDFSSVEAG 472

CP001001_0505: domain 1 of 1, from 298 to 364: score 71.5, E = 8.8e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a++sHELRTPLt+I+g ++l+l+++ ++++
CP001001_0 298 SRRRFFADVSHELRTPLTVILGECDLALRGA--------SRGADP-- 334

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ti++ a+rl ++dlL +r e+g
CP001001_0 335 ----------GPVFATIKKRAQRLKLRVEDLLRVARSESG 364

CP001001_0204: domain 1 of 1, from 672 to 740: score 70.4, E = 1.8e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l ++sH+LRTPL++++g+a++L++ d++l++e +
CP001001_0 672 LRQALLTSISHDLRTPLASVLGAASTLRD-------LDAALPAEAK- 710

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l ti++e+erl+r i +lLd++r+eag
CP001001_0 711 ----------AELLATIIEESERLNRFIANLLDMTRLEAG 740

CP001001_0726: domain 1 of 1, from 595 to 663: score 68.9, E = 5e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+ ++s ELR PLt I+g+++lL +e ++l+e q
CP001001_0 595 LRDTFVHHVSYELRSPLTNIIGFTQLLGDET------VGALNERQ-- 633

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey + i r++ ll +ind+Ldl+ i+ag
CP001001_0 634 ----------REYADHIMRSSAALLVIINDILDLASIDAG 663

CP001001_1418: domain 1 of 1, from 185 to 250: score 68.1, E = 8.3e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+fla +sH+LR+P++aI++++ L+ + l++e+
CP001001_1 185 SKSRFLAQASHDLRQPIHAISLFTACLRG---------ARLGPEE-- 220

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++e i+r++++ +rL lLd+s +++g
CP001001_1 221 ----------LQMVENIDRSLQSVSRLFKSLLDISTLDSG 250

CP001001_5431: domain 1 of 2, from 671 to 737: score 66.9, E = 1.8e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+ + ++sHELRTPL++++gya+lL+ d++ ++
CP001001_5 671 AKSRYVVGISHELRTPLSTVLGYAQLLES--------DPAIPAHR-- 707

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++i+r+a++l+ Li+ lLd+sr+eag
CP001001_5 708 ----------VNGLRVIRRSAQHLSGLIDGLLDISRMEAG 737

CP001001_3043: domain 1 of 1, from 358 to 423: score 63.4, E = 1.8e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + f+a++sHEL++PLt++r ++e+L ++++e r
CP001001_3 358 AIESFAADVSHELKNPLTSLRSAVETLPL----------ARNDESR- 393

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +i+++++rl+rLi+d+ d sr++a+
CP001001_3 394 ----------GRLMAIIQHDVKRLDRLISDIADASRLDAE 423

CP001001_2927: domain 1 of 1, from 209 to 275: score 61.4, E = 6.4e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt+I+ ++lL++ ++l+ee r
CP001001_2 209 AVGQLTGGVAHDFNNLLTVIKSSTDLLKR---------PALPEERR- 245

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y+e i + ++r +L +lL ++r +a
CP001001_2 246 ----------RRYVEAISDTVDRAAKLTGQLLAFARRQAL 275

CP001001_3469: domain 1 of 1, from 90 to 155: score 59.9, E = 1.7e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fla++sH+L +P++a r+ +++L + e ++e
CP001001_3 90 SKTRFLAAASHDLLQPVNAARLSISALAD---------LEVPPEA-- 125

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + ++r ++ +++Li lLd+s+++ag
CP001001_3 126 ----------RAIAGQVERGLQTIEDLIKTLLDISKLDAG 155

CP001001_5152: domain 1 of 1, from 348 to 414: score 59.0, E = 3.1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt+Ir +elL++ ++l+e+ r
CP001001_5 348 AIGQLTGGVAHDFNNLLTVIRSSSELLRR---------PNLPEQRR- 384

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y+e i a+r +L +lL +sr ++
CP001001_5 385 ----------LRYVEAIATTADRAAKLTGQLLAFSRRQSL 414

CP001001_2978: domain 1 of 1, from 432 to 498: score 57.6, E = 7.5e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt+I+ ++lL++ + lse+ r
CP001001_2 432 AVGQLTGGVAHDFNNLLTVIKSSTDLLKR---------PGLSEDRR- 468

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y++ i + ++r +L ++lL ++r +a
CP001001_2 469 ----------GRYVDAISDTVDRAAKLTSQLLAFARRQAL 498

CP001001_4326: domain 1 of 1, from 565 to 631: score 57.5, E = 8.3e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt Ir +e L++ +el ee r
CP001001_4 565 AIGQLTGGVAHDFNNLLTIIRSSVEFLRR---------PELAEERR- 601

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+yl+ + + ++r +L +lL ++r +a
CP001001_4 602 ----------RRYLDAVSDTVDRAAKLTGQLLAFARRQAL 631

CP001001_5157: domain 1 of 1, from 850 to 916: score 56.2, E = 1.9e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt+I+ ++lL++ ++l+e+ r
CP001001_5 850 AVGQLTGGVAHDFNNLLTVIKSSTDLLKR---------PDLTEDRR- 886

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y+ i + ++r +L +lL ++r +a
CP001001_5 887 ----------VRYIAAISDTVDRAAKLTGQLLAFARRQAL 916

CP001001_3002: domain 1 of 1, from 432 to 498: score 55.9, E = 2.4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt Ir +e L++ ++l ee r
CP001001_3 432 AVGQLTGGVAHDFNNLLTIIRSSVEFLRR---------PNLAEERR- 468

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yle + + ++r rL n+lL ++r +
CP001001_3 469 ----------TRYLEAVSDTVDRAARLTNQLLAFARRQPL 498

CP001001_5163: domain 1 of 1, from 571 to 637: score 55.4, E = 3.3e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt+I+ ++lL++ ++l+ee r
CP001001_5 571 AVGQLTGGVAHDFNNLLTVIKSSTDLLKR---------PNLPEERR- 607

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y+ i + ++r rL +lL ++r ++
CP001001_5 608 ----------VRYVGAISDTVDRAARLTGQLLAFARRQTL 637

CP001001_2076: domain 1 of 1, from 637 to 703: score 54.2, E = 7.1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt Ir ++ L++ ++l+e +
CP001001_2 637 AVGQLTGGVAHDFNNLLTIIRSSVDFLRR---------PDLPEVRK- 673

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+yl+ + + +er +L +lL ++r +a
CP001001_2 674 ----------RRYLDAVSETVERAAKLTGQLLAFARRQAL 703

CP001001_4207: domain 1 of 1, from 700 to 766: score 53.2, E = 1.4e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt Ir ++ L++ ++l ee r
CP001001_4 700 AVGQLTGGVAHDFNNLLTIIRSSVDFLRR---------PDLAEERR- 736

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl+ + + ++r +L +lL ++r +a
CP001001_4 737 ----------SRYLNAVSETVDRAAKLTGQLLAFARRQAL 766

CP001001_2137: domain 1 of 1, from 142 to 206: score 52.5, E = 2.1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + a+l+HE+++PL++Irg+a+lL+ + ee+
CP001001_2 142 SMVALGAMLAHEIKNPLAGIRGAAQLLES----------TGAEED-- 176

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +++ i +e++r+ r+++++ + +
CP001001_2 177 ----------RLLTRLICDESDRIVRIVERMELFGDERPS 206

CP001001_5162: domain 1 of 1, from 260 to 326: score 51.5, E = 4.3e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt Ir ++ L++ ++l+e+ r
CP001001_5 260 AVGQLTGGVAHDFNNLLTIIRSSVDFLRR---------PDLPEDRR- 296

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y + + + ++r +L +lL ++r ++
CP001001_5 297 ----------KRYMDAVSDTVDRAAKLTGQLLAFARRQSL 326

CP001001_5150: domain 1 of 1, from 326 to 392: score 50.5, E = 7.9e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt Ir ++ L++ +el+e +
CP001001_5 326 AIGQLTGGVAHDFNNLLTIIRSSVDFLRR---------PELPEARK- 362

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl+ + + ++r +L +lL ++r ++
CP001001_5 363 ----------VRYLDAVSETVDRAAKLTGQLLAFARRQSL 392

CP001001_3224: domain 1 of 1, from 637 to 703: score 50.0, E = 1.1e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt Ir ++ L++ +el+e +
CP001001_3 637 AVGQLTGGVAHDFNNLLTIIRSSVDFLRR---------PELPEARK- 673

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+ + + ++r +L +lL ++r ++
CP001001_3 674 ----------ARYLDAVSDTVDRAAKLTGQLLAFARRQTL 703

CP001001_3226: domain 1 of 1, from 295 to 366: score 48.7, E = 2.6e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++++l+HE+++PLtaI y++ +++ l+g+ e +e +l
CP001001_3 295 ALGEMASTLAHEINQPLTAIASYLKGCRR-----LLGRMEGPEVPLL 336

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ + ++a r + i+ l+d+ ++
CP001001_3 337 ----------ADAVNQAADQALRAGQVIRHLRDFVSRGES 366

CP001001_3433: domain 1 of 1, from 251 to 317: score 47.7, E = 5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e n++H+L+TPLt +r a+ +l+ + + e++
CP001001_3 251 GMREVSDNIAHDLKTPLTRLRNRADEALR---------RASTQEEL- 287

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +le +++e++ l r n lL ++r+eag
CP001001_3 288 ----------RAALEAVIDEGDGLIRVFNALLMIARLEAG 317

CP001001_1459: domain 1 of 1, from 543 to 614: score 46.7, E = 9.6e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++ ++ ++HE+++PLt I++ ae +++++ ++ +++ e
CP001001_1 543 AWGDVARRIAHEIKNPLTPIQLSAERIRRKY----GKVITADKEV-- 583

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + ti r+++ + r+++++ ++r+ +
CP001001_1 584 ---------FDQCTATIVRQVDEIKRMVDEFSAFARMPKP 614

CP001001_3239: domain 1 of 1, from 349 to 418: score 46.5, E = 1.1e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+e l +++H+L++PL++I+g ae+L + ++d + eq+
CP001001_3 349 LKTEILGTIAHDLKNPLAVILGRAEMLSD------LIDMQGDREQM- 388

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++ ++ +a+ l +i+ l+ + +a
CP001001_3 389 ----------RAQVQHVRTSAKGLTTMIDSLMADAMNDAL 418

CP001001_2440: domain 1 of 1, from 241 to 299: score 45.1, E = 2.8e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++la++sH+LRTP+t +r+ ae +++
CP001001_2 241 DRTQMLAAISHDLRTPITRLRLRAEFIED------------------ 269

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + lr++++++ L++ L + r ++
CP001001_2 270 ----------ENARASTLRDLDQMNGLVEAALSFVRDGQI 299

CP001001_3516: domain 1 of 1, from 162 to 232: score 44.9, E = 3e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++ +++H++++ L +I gy+++L ++l+k ++++ +
CP001001_3 162 ALGQLTGGIAHDFNNLLQVIVGYVDILAAGLEK-----PDADRARL- 202

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++e i+++aer L ++lL ++r +
CP001001_3 203 ----------GRATENIRQAAERATTLTQQLLAFARKQRL 232

CP001001_3373: domain 1 of 1, from 268 to 333: score 43.7, E = 6.7e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++a+++HE+R+P++a+r+ ae +l + + +
CP001001_3 268 AVGRLAASVAHEIRNPIAAMRLKAENALV---------SGDPHRT-- 303

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +le +l ++ r + L++dlL l++++
CP001001_3 304 ----------AAALEAVLGQIARVDTLLRDLLNLTQARPL 333

CP001001_4208: domain 1 of 1, from 188 to 253: score 43.4, E = 8.1e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++++++H++++ Lt+I g++e L++ + ++
CP001001_4 188 AVGQLTSGVAHDFNNLLTVIAGNIEFLEK---------AVSDARS-- 223

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l ++ +aer rL +lL +sr +
CP001001_4 224 ----------KRRLAMMRGAAERGARLTAQLLAFSRRQRL 253

CP001001_2539: domain 1 of 1, from 296 to 367: score 43.1, E = 1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++++l+HE+++PLtaI y++ +++ l+++ e e +l
CP001001_2 296 ALGEMASTLAHEINQPLTAIASYLKGCRR-----LLSRMEGAEVLKL 337

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ + ++a r + i+ l+++ ++g
CP001001_2 338 ----------SDAVNEAADQALRAGQVIRHLREFVTRGEG 367

CP001001_0364: domain 1 of 1, from 388 to 456: score 42.9, E = 1.1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+a+++HE+++PL+aIr ya+ + +++ ++e+
CP001001_0 388 ALGQFAASMAHEINQPLAAIRSYADNAAI------LIRRGRGEDA-- 426

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e i r ++r+ L ++l ++r ++
CP001001_0 427 ----------AENAAAIGRLTDRIAGLTRQLKGFARRASP 456

CP001001_2197: domain 1 of 1, from 502 to 568: score 42.8, E = 1.2e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ L aI+gy++lLl+ ++++ + +
CP001001_2 502 AVGQLAGGIAHDFNNVLQAIIGYSDLLLA---------SHRPTDPA- 538

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + i++ a+r L+++lL +sr ++
CP001001_2 539 ----------FQDIMQIKQNANRAAGLVRQLLAFSRRQTL 568

CP001001_3485: domain 1 of 1, from 322 to 390: score 40.8, E = 4.5e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ L++I+g +el+++ l+
CP001001_3 322 AVGQLTGGIAHDFNNLLAGISGSLELIQT----------RLGQGR-- 356

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +y++ ++ +++r +L +lL +sr ++
CP001001_3 357 ------VMDVDRYINAAQGASKRAAALTHRLLAFSRRQTL 390

CP001001_2157: domain 1 of 1, from 265 to 331: score 40.0, E = 7.5e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ ++ +++H++++ LtaI+g +el+ ++ + +
CP001001_2 265 ALGTLAGGIAHDFNNLLTAILGSLELAGP---------KVADQPRV- 301

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++e ++ +aer +L +lL +sr+
CP001001_2 302 ----------QRLIENARGAAERGASLTKRLLSFSRAHDL 331

CP001001_0387: domain 1 of 1, from 289 to 360: score 39.1, E = 1.4e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++++l+HEL++PL aI y++ +++ l + +++e ++
CP001001_0 289 AMGEMASALAHELNQPLGAIANYTKGCRRLL-------ARADPEAIA 328

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e l++ ++a r ++i++l+++ ++
CP001001_0 329 RT--------MEVLDKTAEQALRAGQIIRRLREFVARGEA 360

CP001001_5153: domain 1 of 1, from 144 to 212: score 38.6, E = 1.9e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ +sH+L+ PL +I ++ ++e+l+ + l+ +
CP001001_5 144 ELEQFAYVASHDLKAPLRGIENLVGWIEEDLE------GSLTGDV-- 182

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e +++ ++rl++L++dlL +sr++
CP001001_5 183 ----------LTNMELLKSRVRRLDSLLDDLLAYSRAGRA 212

CP001001_3421: domain 1 of 1, from 261 to 319: score 36.7, E = 6.5e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +l ++sH+LRT Lt r+ + l++
CP001001_3 261 QRTTMLNGVSHDLRTILTRFRLSLALIEQ------------------ 289

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e +e + r+++ ++r+++ L ++r ++
CP001001_3 290 ----------TEEIEDLSRDVDEMSRMLEGYLAFARGDSA 319

CP001001_5577: domain 1 of 1, from 408 to 495: score 35.7, E = 1.2e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldk.......v.lagdt
++++++a+++HE+++PL+ + +a+l e +d ++ ++ l dt
CP001001_5 408 SLGQLTAGIAHEIKNPLNFVNNFASLSNELVDElrevlepAaLDPDT 454

elseeqrlpeLRledpeyreyletilreaerllrLindlLdlsrieag<-
+ e++++ L + le++ + ++r ++++ ++L sr ++g
CP001001_5 455 RAEVEELAGLL-------KGNLEKVVQHGKRADSIVKNMLLHSRTGSG 495

*

CP001001_5 - -

CP001001_1249: domain 1 of 1, from 192 to 262: score 33.4, E = 5.5e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e+ a+++HE+ +PL++I ++a ++l+ l+ +++l+ + +
CP001001_1 192 TLGELSASIAHEIGQPLSSIGMTAGAMLR-----LLDRADLDRDLL- 232

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ ++i +++ r ++i++ + ++ +
CP001001_1 233 ----------RRQCQRIVDQVTRAGDIIDRTRRMAAKRDS 262

CP001001_4371: domain 1 of 1, from 484 to 552: score 33.1, E = 6.6e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +l+H++++ L++I g +el+++++ ++
CP001001_4 484 AVGQLTGGLAHDFNNMLAGIVGSLELMQTRM-------LQGRVGDL- 522

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y+ ++ +a+r +L +lL +sr ++
CP001001_4 523 ----------DRYIGAAQGAAKRAAALTHRLLAFSRRQTL 552

CP001001_4303: domain 1 of 1, from 209 to 274: score 31.3, E = 2.2e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++a+++HEL TPL +I+ ++ L ++l ++ ++ +
CP001001_4 209 QLDGLAAAAAHELGTPLGTIMVVTKELIRQL-------GPTASPAV- 247

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l+ ++++++r++ ++ l + ++
CP001001_4 248 ----------AEDLNLLREQVDRCRGILGKL---TSLDGD 274

CP001001_1244: domain 1 of 1, from 601 to 671: score 31.1, E = 2.5e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ a+++HE ++P+ a+ + ae++l++l + e ++ +++
CP001001_1 601 TVGAISASIAHEVNQPIGAMVMSAEACLRWL------RRETPDLEAA 641

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ e++ r++ r +r++++ ++ r +
CP001001_1 642 ----------ARAAERAVRDGMRASRIVQRTREQLRRDRS 671

CP001001_4210: domain 1 of 1, from 525 to 593: score 31.0, E = 2.7e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f ++sH+LR P I gya lL++ +++++ +++
CP001001_4 525 ELEAFSYSVSHDLRAPFRHIVGYANLLKT-------REGAQLSDKG- 563

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r y+eti+++a + L++ lL +s+++
CP001001_4 564 ----------RHYVETIIEAAFSAGTLVDSLLSFSQMGRH 593

CP001001_3164: domain 1 of 1, from 322 to 388: score 30.5, E = 3.6e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ L+ ++g+++l++ + + +e+
CP001001_3 322 AVGRLTGGIAHDFNNMLSIVIGNLDLMKG--------SLKGNEKA-- 358

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +e++++ a+r+ +L ++lL +sr
CP001001_3 359 ----------LRRVESAIEGAHRCAELTSRLLAFSRRSPL 388

CP001001_4648: domain 1 of 1, from 296 to 363: score 28.3, E = 1.6e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+ ++sHE+RTPL aI g+a+ L + + + + + ++
CP001001_4 296 EQRNFITTVSHEFRTPLMAIDGNAQRLIA-------IKDRAKPGDI- 334

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++i++++ r+ +L + L + ++g
CP001001_4 335 ----------ADRAHRIRSAVFRIASLMSG-LSRALEDTG 363


Histogram of all scores:
score obs exp (one = represents 20 sequences)
----- --- ---
-15 2 0|=
-14 20 0|=
-13 72 4|*===
-12 246 129|======*======
-11 534 674|=========================== *
-10 906 1250|============================================== *
-9 1149 1291|==========================================================*
-8 982 966|================================================*=
-7 709 609|==============================*=====
-6 454 350|=================*=====
-5 246 192|=========*===
-4 136 102|=====*=
-3 85 54|==*==
-2 31 28|=*
-1 16 14|*
0 12 7|*
1 3 4|*
2 7 2|*
3 0 1|*
4 1 0|=
> 5 75 -|====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 335.6695
P(chi-square) = 0

Total sequences searched: 5686

Whole sequence top hits:
tophits_s report:
Total hits: 58
Satisfying E cutoff: 58
Total memory: 22K

Domain top hits:
tophits_s report:
Total hits: 57
Satisfying E cutoff: 57
Total memory: 44K


Acknowledgements:

This research is funded by:

Developed by: