Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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132 projects found  

9 accessions found for Methylobacterium radiotolerans JCM 2831  

Data for CP001002  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001002.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001002_0015 CDS_18312-16543 82.2 7.3e-24 1
CP001002_0066 CDS_77961-79826 63.1 1.9e-18 1
CP001002_0425 CDS_493599-495917 42.0 1.9e-12 1
CP001002_0388 CDS_450324-451592 41.9 1.9e-12 1
CP001002_0394 CDS_458503-461253 38.3 2.1e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001002_0015 1/1 204 270 .. 1 87 [] 82.2 7.3e-24
CP001002_0066 1/1 223 288 .. 1 87 [] 63.1 1.9e-18
CP001002_0425 1/1 398 466 .. 1 87 [] 42.0 1.9e-12
CP001002_0388 1/1 192 260 .. 1 87 [] 41.9 1.9e-12
CP001002_0394 1/1 543 611 .. 1 87 [] 38.3 2.1e-11

Alignments of top-scoring domains:
CP001002_0015: domain 1 of 1, from 204 to 270: score 82.2, E = 7.3e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHE RTPL+aI g+ +lL++ d++l++ q
CP001002_0 204 AKSDFLATMSHEVRTPLNAIVGFGDLLRD--------DPTLTPSQ-- 240

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++ ++ e l +nd+Ld++riea
CP001002_0 241 ----------QRCVDQMRVGCEVLTTVVNDILDYARIEAD 270

CP001002_0066: domain 1 of 1, from 223 to 288: score 63.1, E = 1.9e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sH+LR+P++a +++++L t+l ++q
CP001002_0 223 AKSQFLAAASHDLRQPVHAQGLFLQALSQ---------TDLAAPQ-- 258

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l+ ++ + +++n lLd+sr+eag
CP001002_0 259 ----------RRILQNAQTANVASTDMLNTLLDFSRLEAG 288

CP001002_0425: domain 1 of 1, from 398 to 466: score 42.0, E = 1.9e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +l+H++++ L++I+g +el+++ + + +s +
CP001002_0 398 AVGQLTGGLAHDFNNLLAGISGSLELIEA------RIAQGRSKDV-- 436

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y+ ++ +a+r +L +lL +sr ++
CP001002_0 437 ----------GKYIAAAQGAARRAAALTHRLLAFSRRQTL 466

CP001002_0388: domain 1 of 1, from 192 to 260: score 41.9, E = 1.9e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ +sH+L+ PL +I ++ ++e+l+ + l+ +
CP001002_0 192 ELEQFAYVASHDLKAPLRGIENLVGWIEEDLE------GSLTGDV-- 230

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e +++ ++rl++L++dlL +sr++
CP001002_0 231 ----------QTNMELLKSRVRRLDSLLDDLLAYSRAGRA 260

CP001002_0394: domain 1 of 1, from 543 to 611: score 38.3, E = 2.1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +l+H++++ L++I+g +el+++++ + ++
CP001002_0 543 AVGQLTGGLAHDFNNLLAGISGSLELMQTRM-------SQGRMGDL- 581

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y +++ +a+r +L +lL +sr ++
CP001002_0 582 ----------ERYMTVAQGAAKRAAALTHRLLAFSRRQTL 611


Histogram of all scores:
score obs exp (one = represents 2 sequences)
----- --- ---
-14 2 0|=
-13 9 0|=====
-12 27 11|=====*========
-11 51 60|========================== *
-10 73 111|===================================== *
-9 104 115|==================================================== *
-8 84 86|==========================================*
-7 61 54|==========================*====
-6 40 31|===============*====
-5 22 17|========*==
-4 14 9|====*==
-3 7 4|=*==
-2 3 2|*=
> -1 10 -|=====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 43.4620
P(chi-square) = 7.189e-07

Total sequences searched: 507

Whole sequence top hits:
tophits_s report:
Total hits: 5
Satisfying E cutoff: 5
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 5
Satisfying E cutoff: 5
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: