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Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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132 projects found  

9 accessions found for Methylobacterium radiotolerans JCM 2831  

Data for CP001002  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HWE_HK.hmm [HWE_HK]
Sequence database: CP001002.Gprot.fsa
per-sequence score cutoff: >= 60.0 [TC1]
per-domain score cutoff: >= 60.0 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HWE_HK
Accession: PF07536.4
Description: HWE histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001002_0455 CDS_526427-523878 106.2 6.4e-37 1
CP001002_0474 CDS_552522-556013 95.4 3e-33 2
CP001002_0392 CDS_454153-457728 84.9 1.2e-29 1
CP001002_0020 CDS_23930-26083 84.9 1.2e-29 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001002_0455 1/1 526 608 .. 1 85 [] 106.2 6.4e-37
CP001002_0474 2/2 970 1053 .. 1 85 [] 95.2 3.7e-33
CP001002_0392 1/1 999 1080 .. 1 85 [] 84.9 1.2e-29
CP001002_0020 1/1 532 610 .. 1 85 [] 84.9 1.2e-29

Alignments of top-scoring domains:
CP001002_0455: domain 1 of 1, from 526 to 608: score 106.2, E = 6.4e-37
*->ELnHRVKNtLAvVQSiarQTlRnaasldefveaFsgRLqALsraHdL
ELnHRV+N+L ++ ++++Q++ +a++ ++f e + +R+qAL+raHd+
CP001002_0 526 ELNHRVRNILNLIRGVVTQSRASAGDAEDFTEVVGDRIQALARAHDQ 572

VpLtrseWagAdLreLleaeLaPyggedaeRitlsGPd<-*
+t ++W++++L+eLl+ e a+y g+ a+R++l+G d
CP001002_0 573 --VTSANWGPGSLAELLTVEAAAYLGAKADRVVLDGVD 608

CP001002_0474: domain 2 of 2, from 970 to 1053: score 95.2, E = 3.7e-33
*->ELnHRVKNtLAvVQSiarQTlRnaasldefveaFsgRLqALsraHdL
EL+HR +N+L vVQSia+QT+ +++l++f aF RL+ALsr+++L
CP001002_0 970 ELQHRTRNLLGVVQSIAQQTVAASDTLEAFDSAFNERLAALSRVQGL 1016

VpLtrseWagAdLreLleaeLaPygged.aeRitlsGPd<-*
L+r+ ++ +L++L+++eL++ +++ +eRi+l+GPd
CP001002_0 1017 --LSRAGEEPITLSALIRSELDALAAANlQERIVLDGPD 1053

CP001002_0392: domain 1 of 1, from 999 to 1080: score 84.9, E = 1.2e-29
*->ELnHRVKNtLAvVQSiarQTlRnaasldefveaFsgRLqALsraHdL
EL+HR KN+LA+VQ+ia+ TlR+aa++d ++e + RL+AL+ aHd+
CP001002_0 999 ELSHRMKNLLAMVQAIAASTLRGAADMDTAREVLGSRLVALGKAHDV 1045

VpLtrseWagAdLreLleaeLaPyggedaeRitlsGPd<-*
L +++A+L++++++ ++ +++ ++R+ + GPd
CP001002_0 1046 --LLGGAAESASLAAVVREGVGVQESA-GRRVAFVGPD 1080

CP001002_0020: domain 1 of 1, from 532 to 610: score 84.9, E = 1.2e-29
*->ELnHRVKNtLAvVQSiarQTlRnaasldefveaFsgRLqALsraHdL
EL+HR +N+L vV+++a TlR + veaF++RLqALsra++L
CP001002_0 532 ELQHRTRNLLGVVSAVAGRTLR----EGSPVEAFEARLQALSRAQGL 574

VpLtrseWagAdLreLleaeLaPyggedaeRitlsGPd<-*
L++ ++ ++L++aeLa+y + +a+R t+ GP+
CP001002_0 575 --LSQYGSDTVEVGALVRAELAAYVDGAAGRMTVAGPE 610


Histogram of all scores:
score obs exp (one = represents 2 sequences)
----- --- ---
-13 8 0|====
-12 29 0|===============
-11 39 4|=*==================
-10 71 52|=========================*==========
-9 87 129|============================================ *
-8 86 134|=========================================== *
-7 70 90|=================================== *
-6 38 49|=================== *
-5 29 24|===========*===
-4 22 11|=====*=====
-3 10 5|==*==
-2 3 2|*=
-1 6 1|*==
0 2 0|=
1 1 0|=
2 0 0|
> 3 6 -|===


% Statistical details of theoretical EVD fit:
mu = -7.9989
lambda = 0.7843
chi-sq statistic = 59.6685
P(chi-square) = 1.758e-10

Total sequences searched: 507

Whole sequence top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: