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Classification of phyla is from NCBI page
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264 projects found  

2 accessions found for Xylella fastidiosa M23  

Data for CP001011  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001011.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001011_0390 CDS_496995-499148 96.4 3e-27 1
CP001011_0591 CDS_714184-717756 85.2 4.4e-24 1
CP001011_2013 CDS_2332857-2331517 83.3 1.5e-23 1
CP001011_1967 CDS_2267845-2269182 74.4 5.2e-21 1
CP001011_1976 CDS_2280727-2279060 70.2 8.2e-20 1
CP001011_1864 CDS_2143105-2141429 58.0 2.3e-16 1
CP001011_1054 CDS_1227588-1228637 53.6 4.1e-15 1
CP001011_0251 CDS_337447-338820 40.3 2.4e-11 1
CP001011_0255 CDS_342732-341095 39.2 5e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001011_0390 1/1 189 254 .. 1 87 [] 96.4 3e-27
CP001011_0591 1/1 812 877 .. 1 87 [] 85.2 4.4e-24
CP001011_2013 1/1 214 278 .. 1 87 [] 83.3 1.5e-23
CP001011_1967 1/1 236 302 .. 1 87 [] 74.4 5.2e-21
CP001011_1976 1/1 333 399 .. 1 87 [] 70.2 8.2e-20
CP001011_1864 1/1 309 375 .. 1 87 [] 58.0 2.3e-16
CP001011_1054 1/1 120 187 .. 1 87 [] 53.6 4.1e-15
CP001011_0251 1/1 242 307 .. 1 87 [] 40.3 2.4e-11
CP001011_0255 1/1 179 244 .. 1 87 [] 39.2 5e-11

Alignments of top-scoring domains:
CP001011_0390: domain 1 of 1, from 189 to 254: score 96.4, E = 3e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+flan+sHE+RTPL++++g++e+L + t l++eq
CP001011_0 189 AKSRFLANMSHEFRTPLNGLSGMTEVLAT---------TRLDAEQ-- 224

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re l+ i+ ++++ l+Li+++Ld+srieag
CP001011_0 225 ----------RECLKAIQASVHSVLSLIEEVLDISRIEAG 254

CP001011_0591: domain 1 of 1, from 812 to 877: score 85.2, E = 4.4e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++fla+l HE RTP+t+++g++elLle t+l+ q
CP001011_0 812 AKTQFLATLGHEVRTPMTGVLGMSELLLE---------TPLDTRQ-- 847

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y +i+ ++++llrL+nd Ldl++ieag
CP001011_0 848 ----------HGYATSIQAAGKHLLRLVNDALDLAKIEAG 877

CP001011_2013: domain 1 of 1, from 214 to 278: score 83.3, E = 1.5e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+an+sHELRTPLt++ gy+++L ++ ++
CP001011_2 214 VKRDFVANVSHELRTPLTVVHGYLDMLDP---------DDFPDAA-- 249

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l+ ++++++r+ +L++dlL+lsr+e++
CP001011_2 250 -----------PMLDEMRKQSQRMTQLVEDLLTLSRLESQ 278

CP001011_1967: domain 1 of 1, from 236 to 302: score 74.4, E = 5.2e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +ef a++sHELRTPL++Irg++elLl+ +e++++
CP001011_1 236 RDREFNADVSHELRTPLAVIRGATELLLT--------KPEMDPKI-- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +++i+r+ +++++Li lL lsr e g
CP001011_1 273 ----------QQRIRRIQRAEQQCSDLIGALLLLSRNERG 302

CP001011_1976: domain 1 of 1, from 333 to 399: score 70.2, E = 8.2e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f a+l+HE+R+PL+aI+ +++lL+e +++l+ +
CP001011_1 333 ALGRFSASLAHEIRNPLAAIKHASQLLEE--------SSNLDKGD-- 369

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l++il++ +r + +++ +L l+r e
CP001011_1 370 ----------QRLLDIILKQCQRTNGIVESVLGLARRERA 399

CP001011_1864: domain 1 of 1, from 309 to 375: score 58.0, E = 2.3e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+efl++lsHELRTPLt+I+g +elLl + + + + +
CP001011_1 309 LKDEFLSTLSHELRTPLTTILGWSELLLQRIE------EQHPCYKG- 348

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++i ++a+ rLi+d+Ldls + g
CP001011_1 349 -------------LSVIASSAKVQKRLISDMLDLSSMLLG 375

CP001011_1054: domain 1 of 1, from 120 to 187: score 53.6, E = 4.1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+s + +l+HELR+PL++++g+a+lL +++ +++ e+
CP001011_1 120 ALSAAFKGLAHELRNPLSGLKGAAQLLARRV-------KHRDQEE-- 157

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++e i e+erl+ L+++lL + ++
CP001011_1 158 ----------CDLVELIGAEIERLNTLLERLLFSAPARPH 187

CP001011_0251: domain 1 of 1, from 242 to 307: score 40.3, E = 2.4e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+ ++H++RTPL+a+r+ a+l+le e ++ q+
CP001011_0 242 TLRAFMGEAAHQMRTPLAALRAQAQLALE----------EGDAFQL- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l i+r a +++rL+n+lL + + +
CP001011_0 278 ----------RCSLTAIERNASHMSRLLNQLLSDASAIHR 307

CP001011_0255: domain 1 of 1, from 179 to 244: score 39.2, E = 5e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+a++ H+L +PL+a r+++ +L++ + + +
CP001011_0 179 YKTRFIASAVHDLLQPLNAARMFVAMLRK---------QLHDTDA-- 214

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + i+ ++ +++++ lLd+sr+e+g
CP001011_0 215 ----------LRIANNIDGALIAEDAILSSLLDISRLESG 244


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-15 2 0|=
-14 11 0|==
-13 57 1|*========
-12 135 49|======*=============
-11 217 256|=============================== *
-10 350 475|================================================== *
-9 391 490|======================================================== *
-8 337 367|================================================= *
-7 247 231|================================*===
-6 178 133|==================*=======
-5 95 73|==========*===
-4 49 39|=====*=
-3 35 20|==*==
-2 21 10|=*=
-1 9 5|*=
0 9 2|*=
1 4 1|*
> 2 14 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 256.6828
P(chi-square) = 0

Total sequences searched: 2161

Whole sequence top hits:
tophits_s report:
Total hits: 9
Satisfying E cutoff: 9
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 9
Satisfying E cutoff: 9
Total memory: 24K


Acknowledgements:

This research is funded by:

Developed by: