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Thermotogae
Classification of phyla is from NCBI page
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1 accessions found for Leptothrix cholodnii SP-6  

Data for CP001013  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001013.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001013_2707 CDS_2997499-2993732 99.2 9.8e-28 1
CP001013_0046 CDS_52935-51409 98.8 1.3e-27 1
CP001013_4152 CDS_4686476-4685004 97.7 2.6e-27 1
CP001013_2491 CDS_2724957-2727830 94.3 2.4e-26 1
CP001013_0911 CDS_978789-981257 93.9 3.1e-26 1
CP001013_3445 CDS_3871950-3867949 92.1 1e-25 1
CP001013_4045 CDS_4562034-4558033 90.8 2.3e-25 1
CP001013_0210 CDS_221594-223609 90.4 3e-25 1
CP001013_3521 CDS_3960444-3965255 88.6 9.8e-25 1
CP001013_2440 CDS_2662829-2660289 88.2 1.3e-24 1
CP001013_4089 CDS_4620486-4618081 87.7 1.7e-24 1
CP001013_0235 CDS_251255-254062 87.5 2e-24 1
CP001013_3348 CDS_3743352-3741064 87.4 2.2e-24 1
CP001013_4346 CDS_4890915-4889146 86.5 4e-24 1
CP001013_4187 CDS_4724101-4721828 85.4 8.1e-24 1
CP001013_3157 CDS_3505949-3509212 85.3 8.5e-24 1
CP001013_1075 CDS_1151306-1154968 85.2 8.8e-24 1
CP001013_4185 CDS_4721252-4717920 83.1 3.6e-23 1
CP001013_2733 CDS_3023260-3021920 83.0 3.8e-23 1
CP001013_3681 CDS_4143028-4139963 82.6 4.8e-23 2
CP001013_2469 CDS_2700285-2702825 81.5 1e-22 1
CP001013_2579 CDS_2829378-2835257 81.4 1.1e-22 2
CP001013_1441 CDS_1527582-1530419 80.1 2.4e-22 1
CP001013_1456 CDS_1544049-1547456 78.0 9.8e-22 1
CP001013_2798 CDS_3095640-3094303 74.9 7.4e-21 1
CP001013_2781 CDS_3074516-3076750 69.8 2.1e-19 1
CP001013_0274 CDS_291537-290209 68.3 5.6e-19 1
CP001013_3561 CDS_4000203-4001276 64.7 5.7e-18 1
CP001013_2612 CDS_2874909-2873350 62.7 2.1e-17 1
CP001013_1687 CDS_1812237-1810717 61.5 4.6e-17 1
CP001013_1293 CDS_1386153-1387559 61.2 5.5e-17 1
CP001013_2996 CDS_3326021-3327448 60.0 1.3e-16 1
CP001013_3742 CDS_4224028-4222391 59.4 1.8e-16 1
CP001013_2464 CDS_2694687-2696105 59.4 1.9e-16 2
CP001013_0498 CDS_540079-541635 57.6 5.9e-16 1
CP001013_1566 CDS_1675667-1673334 57.1 8.1e-16 1
CP001013_3714 CDS_4178269-4180296 55.5 2.3e-15 1
CP001013_0733 CDS_783595-784890 52.7 1.5e-14 1
CP001013_0378 CDS_413479-415563 52.4 1.8e-14 1
CP001013_2286 CDS_2486953-2485769 52.3 1.9e-14 1
CP001013_2560 CDS_2806319-2807788 52.0 2.3e-14 1
CP001013_4072 CDS_4597383-4595569 50.9 4.8e-14 1
CP001013_3979 CDS_4485246-4482922 50.6 5.8e-14 1
CP001013_2287 CDS_2487708-2486950 49.6 1.1e-13 1
CP001013_1636 CDS_1751887-1749455 49.5 1.1e-13 2
CP001013_2517 CDS_2759300-2757873 46.8 6.6e-13 1
CP001013_3426 CDS_3846534-3847928 46.6 7.7e-13 1
CP001013_3567 CDS_4007521-4005563 43.4 6.4e-12 1
CP001013_2708 CDS_2997834-2999183 40.0 5.9e-11 1
CP001013_1885 CDS_2051887-2050472 39.4 8.5e-11 1
CP001013_1858 CDS_2020087-2021373 36.0 7.6e-10 1
CP001013_0053 CDS_59270-58623 34.8 1.7e-09 1
CP001013_0108 CDS_113549-112164 33.0 5.6e-09 1
CP001013_4256 CDS_4790987-4792531 32.4 8.3e-09 1
CP001013_4094 CDS_4626087-4624594 32.1 9.7e-09 1
CP001013_4314 CDS_4856756-4854954 29.8 4.4e-08 1
CP001013_3895 CDS_4402478-4404610 29.3 6.2e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001013_2707 1/1 596 661 .. 1 87 [] 99.2 9.8e-28
CP001013_0046 1/1 277 345 .. 1 87 [] 98.8 1.3e-27
CP001013_4152 1/1 266 334 .. 1 87 [] 97.7 2.6e-27
CP001013_2491 1/1 287 352 .. 1 87 [] 94.3 2.4e-26
CP001013_0911 1/1 256 321 .. 1 87 [] 93.9 3.1e-26
CP001013_3445 1/1 586 651 .. 1 87 [] 92.1 1e-25
CP001013_4045 1/1 686 751 .. 1 87 [] 90.8 2.3e-25
CP001013_0210 1/1 424 492 .. 1 87 [] 90.4 3e-25
CP001013_3521 1/1 851 916 .. 1 87 [] 88.6 9.8e-25
CP001013_2440 1/1 248 313 .. 1 87 [] 88.2 1.3e-24
CP001013_4089 1/1 153 218 .. 1 87 [] 87.7 1.7e-24
CP001013_0235 1/1 683 750 .. 1 87 [] 87.5 2e-24
CP001013_3348 1/1 386 451 .. 1 87 [] 87.4 2.2e-24
CP001013_4346 1/1 364 429 .. 1 87 [] 86.5 4e-24
CP001013_4187 1/1 530 596 .. 1 87 [] 85.4 8.1e-24
CP001013_3157 1/1 568 633 .. 1 87 [] 85.3 8.5e-24
CP001013_1075 1/1 757 823 .. 1 87 [] 85.2 8.8e-24
CP001013_4185 1/1 480 545 .. 1 87 [] 83.1 3.6e-23
CP001013_2733 1/1 213 279 .. 1 87 [] 83.0 3.8e-23
CP001013_3681 1/2 270 335 .. 1 87 [] 81.8 8.4e-23
CP001013_2469 1/1 473 538 .. 1 87 [] 81.5 1e-22
CP001013_2579 2/2 1230 1295 .. 1 87 [] 80.2 2.4e-22
CP001013_1441 1/1 564 629 .. 1 87 [] 80.1 2.4e-22
CP001013_1456 1/1 651 716 .. 1 87 [] 78.0 9.8e-22
CP001013_2798 1/1 209 275 .. 1 87 [] 74.9 7.4e-21
CP001013_2781 1/1 497 563 .. 1 87 [] 69.8 2.1e-19
CP001013_0274 1/1 215 280 .. 1 87 [] 68.3 5.6e-19
CP001013_3561 1/1 133 198 .. 1 87 [] 64.7 5.7e-18
CP001013_2612 1/1 252 317 .. 1 87 [] 62.7 2.1e-17
CP001013_1687 1/1 259 324 .. 1 87 [] 61.5 4.6e-17
CP001013_1293 1/1 92 164 .. 1 87 [] 61.2 5.5e-17
CP001013_2996 1/1 236 301 .. 1 87 [] 60.0 1.3e-16
CP001013_3742 1/1 294 362 .. 1 87 [] 59.4 1.8e-16
CP001013_2464 1/2 243 307 .. 1 87 [] 58.5 3.3e-16
CP001013_0498 1/1 248 318 .. 1 87 [] 57.6 5.9e-16
CP001013_1566 1/1 414 479 .. 1 87 [] 57.1 8.1e-16
CP001013_3714 1/1 450 518 .. 1 87 [] 55.5 2.3e-15
CP001013_0733 1/1 220 284 .. 1 87 [] 52.7 1.5e-14
CP001013_0378 1/1 461 526 .. 1 87 [] 52.4 1.8e-14
CP001013_2286 1/1 137 205 .. 1 87 [] 52.3 1.9e-14
CP001013_2560 1/1 249 312 .. 1 87 [] 52.0 2.3e-14
CP001013_4072 1/1 243 308 .. 1 87 [] 50.9 4.8e-14
CP001013_3979 1/1 511 584 .. 1 87 [] 50.6 5.8e-14
CP001013_2287 1/1 17 90 .. 1 87 [] 49.6 1.1e-13
CP001013_1636 1/2 562 632 .. 1 87 [] 48.5 2.2e-13
CP001013_2517 1/1 251 309 .. 1 87 [] 46.8 6.6e-13
CP001013_3426 1/1 227 295 .. 1 87 [] 46.6 7.7e-13
CP001013_3567 1/1 290 356 .. 1 87 [] 43.4 6.4e-12
CP001013_2708 1/1 221 289 .. 1 87 [] 40.0 5.9e-11
CP001013_1885 1/1 259 318 .. 1 87 [] 39.4 8.5e-11
CP001013_1858 1/1 213 277 .. 1 87 [] 36.0 7.6e-10
CP001013_0053 1/1 2 39 .. 32 87 .] 34.8 1.7e-09
CP001013_0108 1/1 247 310 .. 1 87 [] 33.0 5.6e-09
CP001013_4256 1/1 277 347 .. 1 87 [] 32.4 8.3e-09
CP001013_4094 1/1 280 348 .. 1 87 [] 32.1 9.7e-09
CP001013_4314 1/1 362 430 .. 1 87 [] 29.8 4.4e-08
CP001013_3895 1/1 465 542 .. 1 87 [] 29.3 6.2e-08

Alignments of top-scoring domains:
CP001013_2707: domain 1 of 1, from 596 to 661: score 99.2, E = 9.8e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+f+a++sHE+RTP+++I+g++elLl t l++ q
CP001013_2 596 AKSQFMASMSHEIRTPMNGILGMTELLLG---------TRLDDRQ-- 631

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ + ++r++e ll++ind+Ld+s+ieag
CP001013_2 632 ----------RRFAQAVYRSGENLLEIINDVLDFSKIEAG 661

CP001013_0046: domain 1 of 1, from 277 to 345: score 98.8, E = 1.3e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks flan+sHELRTPL+aI+g++e+L e+++ +e +++q
CP001013_0 277 NKSAFLANMSHELRTPLNAIIGFSEVLIEQMF------GEVNAKQ-- 315

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
eyl+ i+ ++++ll Lind+Ldls+ieag
CP001013_0 316 ----------LEYLRDIHASGHHLLTLINDVLDLSKIEAG 345

CP001013_4152: domain 1 of 1, from 266 to 334: score 97.7, E = 2.6e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++flan+sHELRTPL+aI+g++ +Ll++l ++l+++q
CP001013_4 266 AKTRFLANMSHELRTPLNAIIGFTGTLLMRL------PGPLTPDQ-- 304

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l+t++ ++++ll+LindlLd ++ieag
CP001013_4 305 ----------ERQLRTVQASGRHLLALINDLLDVAKIEAG 334

CP001013_2491: domain 1 of 1, from 287 to 352: score 94.3, E = 2.4e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTP++aI+g+++lL++ t++++
CP001013_2 287 AKSTFLANMSHEIRTPMNAIIGLTQLLRR---------THRDPAG-- 322

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l ++ ++a++ll++ind+Ldls+ie+g
CP001013_2 323 ----------AEQLAKVADAADHLLQIINDVLDLSKIESG 352

CP001013_0911: domain 1 of 1, from 256 to 321: score 93.9, E = 3.1e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHELRTP ++++g+++lL++ ++l++ q
CP001013_0 256 AKSAFLANMSHELRTPFNGLLGMLSLLQR---------SPLDARQ-- 291

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+t+++++e+ll+++nd+Ld+s++e+g
CP001013_0 292 ----------ADYLQTARESGEHLLAILNDVLDISKLESG 321

CP001013_3445: domain 1 of 1, from 586 to 651: score 92.1, E = 1e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHE+RTP++aI g+++lL++ + l+++q
CP001013_3 586 AKSEFLANMSHEIRTPMAAIVGLSHLLEN---------SRLNPDQ-- 621

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l++++ ++++l + i+d+Ldls+ieag
CP001013_3 622 ----------QDLLRKMRGASKSLMAVIDDVLDLSKIEAG 651

CP001013_4045: domain 1 of 1, from 686 to 751: score 90.8, E = 2.3e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTP++aI+g+++l+ + +++++ q
CP001013_4 686 AKSAFLANMSHEIRTPMNAIIGLTHLMAR---------DTRDSLQ-- 721

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re l +i+++a++ll++ind+Ldls+i+ag
CP001013_4 722 ----------RERLGKIDSAAKHLLQIINDVLDLSKIDAG 751

CP001013_0210: domain 1 of 1, from 424 to 492: score 90.4, E = 3e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ksefla++sHELRTPL+aI+g+++lLl+++ ++l+++q
CP001013_0 424 MKSEFLASMSHELRTPLNAILGFTDLLLMKGA------GPLTPDQ-- 462

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l+ i+ + r l+Li dlLdl+rieag
CP001013_0 463 ----------EKKLRHIHAGGSRQLSLIGDLLDLARIEAG 492

CP001013_3521: domain 1 of 1, from 851 to 916: score 88.6, E = 9.8e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHE+RTP++aI+g++ lL + tel + q
CP001013_3 851 AKSEFLANMSHEIRTPMNAILGMLALLHK---------TELAPRQ-- 886

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y+ + + +a++llrL+nd+Ld+s++ea+
CP001013_3 887 ----------ADYVAKTEGAARSLLRLLNDILDFSKAEAE 916

CP001013_2440: domain 1 of 1, from 248 to 313: score 88.2, E = 1.3e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTPL+aI+g+a lL++ ++l+++q
CP001013_2 248 AKSSFLANMSHEIRTPLNAILGLARLLRR---------STLDAQQ-- 283

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + +i+++a++ll Li+d+Ldls+ eag
CP001013_2 284 ----------ADRIAKIDDAAHHLLGLISDVLDLSKVEAG 313

CP001013_4089: domain 1 of 1, from 153 to 218: score 87.7, E = 1.7e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTPL+a++g++ lL + t++s+eq
CP001013_4 153 AKSLFLANMSHEIRTPLNAVIGMTTLLMD---------TPMSDEQ-- 188

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +ti+ ++e ll ind+Ld+s+++ g
CP001013_4 189 ----------LDFARTIRASGETLLGVINDILDFSKADVG 218

CP001013_0235: domain 1 of 1, from 683 to 750: score 87.5, E = 2e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f++++ HELRTPLt+Ir++ael+++ +++++e qr
CP001013_0 683 LKDDFMSSVTHELRTPLTSIRALAELMRD--------EADMPEAQR- 720

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +i e+erl+rL+n++Ld+++ie+g
CP001013_0 721 ----------QQFMTIIVGETERLSRLVNQVLDMAKIESG 750

CP001013_3348: domain 1 of 1, from 386 to 451: score 87.4, E = 2.2e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ flan+sHE+RTP++aI+g++ lLl+ ++ +++
CP001013_3 386 AKGSFLANMSHEIRTPMNAIIGLSALLLR---------KPQEPDT-- 421

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l i+ ++++ll +ind+Ldls+ieag
CP001013_3 422 ----------ADKLGLIEASGKHLLGIINDILDLSKIEAG 451

CP001013_4346: domain 1 of 1, from 364 to 429: score 86.5, E = 4e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+efla++sHELRTPLt+Irg+ael+++ ++
CP001013_4 364 AKTEFLAAISHELRTPLTSIRGFAELMEK---------RIEQPKF-- 399

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ i+r+ae+l++L+ ++Ld+++ieag
CP001013_4 400 ----------KDQAGMIRRAAEHLNALLTQILDFAKIEAG 429

CP001013_4187: domain 1 of 1, from 530 to 596: score 85.4, E = 8.1e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ksefl++++HELRTP+++I g+ael+l+ +ls+e++
CP001013_4 530 MKSEFLSTAAHELRTPMASIFGFAELMLR---------RKLSAEKQ- 566

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l ti+r+++ + ++in+lLdl+riea
CP001013_4 567 ----------LDVLTTIHRQSQLMISIINELLDLARIEAR 596

CP001013_3157: domain 1 of 1, from 568 to 633: score 85.3, E = 8.5e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ flan+sHE+RTP++aI+g+++l+ + + +++ q
CP001013_3 568 SKTAFLANMSHEIRTPMNAIIGLTHLMAR---------DSRDALQ-- 603

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l++++ +a++ll++ind+Ldls+ieag
CP001013_3 604 ----------RDRLRKVDGAARHLLQIINDILDLSKIEAG 633

CP001013_1075: domain 1 of 1, from 757 to 823: score 85.2, E = 8.8e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+ + ++sHELRTPL++I+gya+lL+e d+++++
CP001013_1 757 AKSRYITSISHELRTPLNSILGYAQLLEE--------DDAMPAHR-- 793

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++i+r +++ll+Li+ Ldl+rie+g
CP001013_1 794 ----------KQAVSVIRRGGDHLLSLIEGTLDLARIESG 823

CP001013_4185: domain 1 of 1, from 480 to 545: score 83.1, E = 3.6e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTP++aI g+a+lL++ ++ +
CP001013_4 480 AKSAFLANMSHEIRTPMNAIVGLAHLLRR---------DAHEPVA-- 515

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l ++++a +ll+ ind+Ldls+ieag
CP001013_4 516 ----------AQRLGQMIDAAGHLLQVINDILDLSKIEAG 545

CP001013_2733: domain 1 of 1, from 213 to 279: score 83.0, E = 3.8e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ksefla+++HELRTP++++ g++elL + e+ ++ r
CP001013_2 213 MKSEFLATAAHELRTPMASVFGFTELLVT---------REMAPQRR- 249

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ le+++r++ + +++n+lLdl+rie+g
CP001013_2 250 ----------QDVLERVYRQSGAMVSILNELLDLARIESG 279

CP001013_3681: domain 1 of 2, from 270 to 335: score 81.8, E = 8.4e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+eflan+sHE+RTP++aI+g++ l+l+ ++l +
CP001013_3 270 AKGEFLANMSHEIRTPINAILGMLYLALK---------SDLAPSV-- 305

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r yl +++++a+ ll ind+Ldls+ieag
CP001013_3 306 ----------RNYLGKAQNAAHALLGVINDILDLSKIEAG 335

CP001013_2469: domain 1 of 1, from 473 to 538: score 81.5, E = 1e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k +flan+sHE+RTPL+aI g+a+l+++ + lse+q
CP001013_2 473 VKAQFLANMSHEIRTPLNAIGGMAHLIRR---------QGLSEKQ-- 508

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++++r++ +ll+ in +L+ls+i+ag
CP001013_2 509 ----------TRQMDSLERASAHLLSVINSILELSKIDAG 538

CP001013_2579: domain 2 of 2, from 1230 to 1295: score 80.2, E = 2.4e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTP++aI+g+++lLl+ + + q
CP001013_2 1230 AKSVFLANMSHEIRTPMNAIIGLTHLLLR---------DSTDTVQ-- 1265

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l + +a++ll+ ind+Ldls+ie+g
CP001013_2 1266 ----------QERLGQVTGAAHHLLDVINDILDLSKIESG 1295

CP001013_1441: domain 1 of 1, from 564 to 629: score 80.1, E = 2.4e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTPL+aI g+++l++ + l++ q
CP001013_1 564 AKSAFLANMSHEIRTPLNAIVGMSHLIRL---------AGLPPAQ-- 599

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e l++++ +a +ll+++n +Ldls+i+ag
CP001013_1 600 ----------TERLDKLKAAATHLLEILNAILDLSKIDAG 629

CP001013_1456: domain 1 of 1, from 651 to 716: score 78.0, E = 9.8e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTP++aI+g+ l ++ + ++eq
CP001013_1 651 AKSAFLANMSHEIRTPMNAIIGLNYLVRR---------SGVTPEQ-- 686

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ le+++++ ++ll++ind+Ldls+ieag
CP001013_1 687 ----------AARLEKVDSACQHLLSIINDILDLSKIEAG 716

CP001013_2798: domain 1 of 1, from 209 to 275: score 74.9, E = 7.4e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+an+sHE+RTPLt++ g++e++ + +l+e++r
CP001013_2 209 MRRDFVANVSHEIRTPLTVLGGFVETMSN---------LPLTEPER- 245

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l + +++r++ L+ dlL l+++e
CP001013_2 246 ----------KRVLTLMTLQTQRMQTLVADLLILAQLEGS 275

CP001013_2781: domain 1 of 1, from 497 to 563: score 69.8, E = 2.1e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ef+an+sH LRTPL +++g+ael + + +
CP001013_2 497 SKNEFIANMSHGLRTPLQSVLGFAELGKW---------RSAEQRPL- 533

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+++ i+ +++r+l L+ndlLd+s++e+
CP001013_2 534 ----------QEMFSDIHAAGKRMLLLVNDLLDMSKLEST 563

CP001013_0274: domain 1 of 1, from 215 to 280: score 68.3, E = 5.6e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+a+++HELR PLta+++ ++lL++ + ++ +r
CP001013_0 215 TQRAFVADAAHELRSPLTALKLQLHLLQR----------AGNDGDR- 250

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e++ t++ +er rL+++lL l+r e g
CP001013_0 251 ----------DEAIATLRAGIERAVRLVEQLLALARSEPG 280

CP001013_3561: domain 1 of 1, from 133 to 198: score 64.7, E = 5.7e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
e+++nl+HE+++PL +Irg+a+lL++ el+++ +
CP001013_3 133 VTKELIRNLAHEIKNPLGGIRGAAQLLEM----------ELDDKSL- 168

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
ey+++i++ea+rl++L+++lL r +
CP001013_3 169 ----------TEYTQVIIHEADRLQALVDRLLAPHRRPHI 198

CP001013_2612: domain 1 of 1, from 252 to 317: score 62.7, E = 2.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+++++HELRTP+++Ir+ a+++le ++ qr
CP001013_2 252 SERRFTSDAAHELRTPIAGIRAQAQAALE----------VSDDAQR- 287

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l+ l ++ +L+++lL+l+r+e
CP001013_2 288 ----------RQALHGTLAGCDHAAHLVDQLLQLARLEGA 317

CP001013_1687: domain 1 of 1, from 259 to 324: score 61.5, E = 4.6e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+++++H+LRTPL++++g +el+l+ e +++ +
CP001013_1 259 NQRRFISDAAHQLRTPLAGLKGQTELALK----------ETTDPAL- 294

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r le+++++a r +L+ +lL+l+r+e +
CP001013_1 295 ----------RTRLERVHESATRSAHLVTQLLTLARAEPE 324

CP001013_1293: domain 1 of 1, from 92 to 164: score 61.2, E = 5.5e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++f++++sH+LR+PL+a+ ++ae+L++++ ++ +++ +++
CP001013_1 92 AKTQFFSAASHDLRQPLHALGLFAETLRRKQ----GRTGAAADDD-- 132

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e++++++ i +++ l+ L ++lLdl+ i++g
CP001013_1 133 --------EVAQLVHDIVESVGALEGLFDELLDLTHIDSG 164

CP001013_2996: domain 1 of 1, from 236 to 301: score 60.0, E = 1.3e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f a+++HEL TP++aIr+ a+++l+ e ++eqr
CP001013_2 236 QERRFNADAAHELTTPIAAIRAQAQVALR----------ESDAEQR- 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l+ l+ +r ++L+ +lL+l+rie+
CP001013_2 272 ----------QHALRATLSGCDRASHLVAQLLQLARIESA 301

CP001013_3742: domain 1 of 1, from 294 to 362: score 59.4, E = 1.8e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la++sH+ RTPL++I+ +a+ L e++ + l + qr
CP001013_3 294 VRNALLAAISHDYRTPLATIMSAASSLDEQA-------DRLAPAQR- 332

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ++i +e+ rl+rL ++ L+l+r++a+
CP001013_3 333 ----------QRLAHSIVDEVTRLSRLTDNTLQLARLDAP 362

CP001013_2464: domain 1 of 2, from 243 to 307: score 58.5, E = 3.3e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ +a++sHELRTPL+++rg +e+++++ ++l+++
CP001013_2 243 MRRDYMADISHELRTPLSVLRGEIEAMEDGI-------HPLTPQN-- 280

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l +++ e++ l +L+ndl +l+ ++ g
CP001013_2 281 -------------LGVLHGEVQTLTQLVNDLHELALADVG 307

CP001013_0498: domain 1 of 1, from 248 to 318: score 57.6, E = 5.9e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +fla+++H+L+TPL+++r+ ael+ + + +++ ++ +
CP001013_0 248 TQKRFLADAAHQLKTPLAGLRMQAELAAR-----AVASGNGDARAL- 288

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ le + ++++r +++n+lL ++r++a+
CP001013_0 289 ----------QASLEHMANASQRAAHMVNQLLSMARADAQ 318

CP001013_1566: domain 1 of 1, from 414 to 479: score 57.1, E = 8.1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++fla++sH+LR+P+ aI +++lL+e + + + q
CP001013_1 414 TKTRFLAAASHDLRQPVVAIGILIDLLRE---------HIQVPAQ-- 449

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++++++ +++ ++++L+ lLdlsr+eag
CP001013_1 450 ----------RRMIDRVNDAVASMEALLKGLLDLSRLEAG 479

CP001013_3714: domain 1 of 1, from 450 to 518: score 55.5, E = 2.3e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++a+++HE ++P+++I+g++++L+ +l +++++ ++
CP001013_3 450 AVGQLTASIAHEVNNPIAVIQGNLDVLRSQL-------PAATAATV- 488

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+ i++++er++ ++ +lL++++ +
CP001013_3 489 ----------HTELRLIDEQIERMRLIVTQLLQFAKPAEY 518

CP001013_0733: domain 1 of 1, from 220 to 284: score 52.7, E = 1.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + +lan+sHELR PL+ +++++e+++ ++++
CP001013_0 220 ANRSLLANASHELRSPLARLKMAVEMIEG----------AAPDRR-- 254

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + i+r+++ l++L++++L sr++a+
CP001013_0 255 ----------ADLKREIDRDIRELDALVEEVLLASRLDAQ 284

CP001013_0378: domain 1 of 1, from 461 to 526: score 52.4, E = 1.8e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++ a+++HE+R+PL+aI+ + lL e +l+ + +
CP001013_0 461 AMGRVSAGIAHEIRNPLAAISQANALLAE----------DLTVPAQ- 496

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ + + + +erl+r+++d+++ +
CP001013_0 497 ----------RQLARMVADNVERLQRIVDDVMEVAPGAPR 526

CP001013_2286: domain 1 of 1, from 137 to 205: score 52.3, E = 1.9e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l ++ HELRTPLt I+gy++lL +++ + s++q+
CP001013_2 137 LRGALLTSVPHELRTPLTNILGYSQLLIARG-------GRISADQQ- 175

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + i+++a+rl+r i + + s + a
CP001013_2 176 ----------ADMHRHIHDSAQRLSRTIGRYMAWSELNAA 205

CP001013_2560: domain 1 of 1, from 249 to 312: score 52.0, E = 2.3e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f++++sH+LRTPL+++++ ++ +l+ ++l++
CP001013_2 249 RQKRFVRDASHQLRTPLAVLKTQVQSALR---------GDLPA---- 282

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l+ i+ ++ rL n++L l+++++
CP001013_2 283 ----------HEALREIRATVDGATRLANQMLALAKLDQV 312

CP001013_4072: domain 1 of 1, from 243 to 308: score 50.9, E = 4.8e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+a++sH+LR+P++a+ +++ +L++ + ++ +
CP001013_4 243 DKRRFVAAASHDLRQPMHALGLFVATLER---------HLKGTAD-- 278

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ + r++e l+r lLdlsr+eag
CP001013_4 279 ----------EALVRNMMRSIEALDRSFGALLDLSRLEAG 308

CP001013_3979: domain 1 of 1, from 511 to 584: score 50.6, E = 5.8e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a e ++ ++HE+++PLt I++ ae L+ +l+ a+ +e ++q+l
CP001013_3 511 AWAEVARRVAHEIKNPLTPIQLSAERLQHKLE---AKLAEPADQQML 554

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + ti +++ l ++n+++d++r+ +
CP001013_3 555 ----------ARSVATIVAQVQALKTIVNEFRDYARLPSA 584

CP001013_2287: domain 1 of 1, from 17 to 90: score 49.6, E = 1.1e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkv.lagdtelseeqr
+++++a++sHE+RTPL++I++ a l+++ +v++++ +e ++ +
CP001013_2 17 LRERLVATVSHEFRTPLAVIQASAGLIRR---RVgTLSVDEHDARRM 60

lpeLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+i++++ + + i+++L + ri+ag
CP001013_2 61 -----------LASCERIEQATSTMVAAIERVLLIDRIGAG 90

CP001013_1636: domain 1 of 2, from 562 to 632: score 48.5, E = 2.2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++++++HEL++PL+aI y++ + ++l + ++l++e++
CP001013_1 562 TMGEMASSVAHELNQPLAAIANYCSGIITRL-----KAGKLNDEEL- 602

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+le+ r+a+r ++i +++ + + ++
CP001013_1 603 ----------LGALEKTARQAHRAGQIIHRIRAFVKRSEP 632

CP001013_2517: domain 1 of 1, from 251 to 309: score 46.8, E = 6.6e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ +l ++sHELR PLt r++ael e
CP001013_2 251 AKRALLLAISHELRSPLTRARLNAELVDE------------------ 279

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +lr++ +++LindlL+ +r+ ag
CP001013_2 280 ----------GSARDALLRDLGEMRELINDLLESERLAAG 309

CP001013_3426: domain 1 of 1, from 227 to 295: score 46.6, E = 7.7e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + f+a+ +HELRTPL+a r+ a+ L e+ e + +q+
CP001013_3 227 AERAFAAHTAHELRTPLAAARAQAQRLAVEA-------NEHGTPQL- 265

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e + r+++rl rL ++lL+l+r ++g
CP001013_3 266 ----------VERALALMRQLDRLTRLASRLLQLARVDSG 295

CP001013_3567: domain 1 of 1, from 290 to 356: score 43.4, E = 6.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++ +l+H++++ Lt+I+g++ +L e + ++ ++
CP001013_3 290 ALGQLTGGLAHDFNNLLTVIIGNLGILTE---------QRRDTADT- 326

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e++ +l++a+r +Li++lL ++r +
CP001013_3 327 ----------AEFVAPALQAARRGAELIRRLLSFARQQPL 356

CP001013_2708: domain 1 of 1, from 221 to 289: score 40.0, E = 5.9e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + ++sH+LR P+ +I g++ + +e++ ++l +
CP001013_2 221 DRESIAYTVSHDLRAPIRVIEGFTRIVREDY-------GHLLDRIG- 259

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+++l +a r++ +i+ lL lsr+ ++
CP001013_2 260 ----------NDHLDRVLGAATRMNTMIDALLALSRLSNQ 289

CP001013_1885: domain 1 of 1, from 259 to 318: score 39.4, E = 8.5e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +la++sH+LRTPL+ Ir+ +e+ +
CP001013_1 259 DRAVMLAGISHDLRTPLARIRLETEMSVSD----------------- 288

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ + + ++++l+++i+ ++d++r +
CP001013_1 289 ----------EEARSNMAMDIDQLDAIIDKFMDYARPTEV 318

CP001013_1858: domain 1 of 1, from 213 to 277: score 36.0, E = 7.6e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f a+++H LRTPL++I + + ++l+ e ++e
CP001013_1 213 HERVFSAHAAHALRTPLAGIDAQLAVALR----------ESPPEL-- 247

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+++++++ rl+r + lL l r a
CP001013_1 248 ----------QPRLRRVREASTRLQRVVAALLLLFRNKAK 277

CP001013_0053: domain 1 of 1, from 2 to 39: score 34.8, E = 1.7e-09
*->dkvlagdtelseeqrlpeLRledpeyreyletilreaerllrLindl
+ +el+ q eyl+ i+ ++++ll+Lind+
CP001013_0 2 F------GELNQRQ------------LEYLHDIHASGHHLLQLINDI 30

Ldlsrieag<-*
Ldl++ieag
CP001013_0 31 LDLTKIEAG 39

CP001013_0108: domain 1 of 1, from 247 to 310: score 33.0, E = 5.6e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+e +a+ +H +R+PL++Ir +ael ++e +++s+e
CP001013_0 247 LVGEIAAATAHSIRNPLASIRSTAEL-QREI-------GDMSPEM-- 283

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++r++rL++ lL++sr +
CP001013_0 284 -------------ANETILHVDRIERLVRTLLTYSRDAVE 310

CP001013_4256: domain 1 of 1, from 277 to 347: score 32.4, E = 8.3e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++a+++HEL++PLta+++ ++++ + l+ d++ ++
CP001013_4 277 ALGELAAGMAHELNQPLTAVLASTQTATR-----LLADDPPELGTA- 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +++ +a+r ++ +++l+ + +
CP001013_4 318 ----------QLAMQRAVAQARRASEVLQRLRRVVQPSGP 347

CP001013_4094: domain 1 of 1, from 280 to 348: score 32.1, E = 9.7e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ ++a+++HE ++PL++I g a+ L + +++++ ++
CP001013_4 280 ALGALAAGVAHEVNNPLAVIAGVAQELDA---------LDADAPPAR 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e+ + il +++r r ++l +l+ +
CP001013_4 318 ---------IGEAARLILAQTQRAARAARNLAELAAPQPT 348

CP001013_4314: domain 1 of 1, from 362 to 430: score 29.8, E = 4.4e-08
*->akseflanlsHELRTPLtaIrgyae...lLleeldkvlagdtelsee
a++++ a+l HE+++PL a+r+++++ lLle + ++++
CP001013_4 362 ALGQMSAGLVHEMNQPLGAMRTLSDnacLLLE---------QQRTAD 399

qrlpeLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l++i r ++rl rL +l ++ a+
CP001013_4 400 V------------QANLQRIGRMVDRLGRLTGQLKAFAHKAAP 430

CP001013_3895: domain 1 of 1, from 465 to 542: score 29.3, E = 6.2e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e+++ lsHEL++PL+aI ya+ l+ +l+++++ + ++
CP001013_3 465 TMGEMASLLSHELNQPLAAIASYASGSLN----LLPQSANDAPADLD 507

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ L ++r + ++ ++a+r r i+ + ++ r ++
CP001013_3 508 TQL-----MIRHAMTRAAEQADRAGRVIRSVHQFVRRRER 542


Histogram of all scores:
score obs exp (one = represents 16 sequences)
----- --- ---
-14 7 0|=
-13 34 3|*==
-12 137 99|======*==
-11 330 517|===================== *
-10 649 959|========================================= *
-9 887 990|======================================================== *
-8 793 741|==============================================*===
-7 591 467|=============================*=======
-6 357 269|================*======
-5 223 147|=========*====
-4 130 78|====*====
-3 67 41|==*==
-2 50 21|=*==
-1 27 11|*=
0 8 5|*
1 7 3|*
2 2 1|*
3 3 0|=
4 0 0|
5 0 0|
6 1 0|=
7 0 0|
8 0 0|
> 9 60 -|====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 402.6351
P(chi-square) = 0

Total sequences searched: 4363

Whole sequence top hits:
tophits_s report:
Total hits: 57
Satisfying E cutoff: 57
Total memory: 22K

Domain top hits:
tophits_s report:
Total hits: 57
Satisfying E cutoff: 57
Total memory: 43K


Acknowledgements:

This research is funded by:

Developed by: