Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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132 projects found  

3 accessions found for Beijerinckia indica subsp. indica ATCC 9039  

Data for CP001016  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001016.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001016_1922 CDS_2231802-2234252 104.4 2.7e-29 1
CP001016_1849 CDS_2148575-2149744 92.4 6.8e-26 1
CP001016_3136 CDS_3681086-3679143 89.3 5.2e-25 1
CP001016_1611 CDS_1854394-1852643 88.7 7.3e-25 1
CP001016_1894 CDS_2199043-2200827 84.1 1.6e-23 1
CP001016_0960 CDS_1119123-1115731 80.6 1.5e-22 1
CP001016_3097 CDS_3637251-3638321 80.0 2.1e-22 1
CP001016_1996 CDS_2327030-2324637 78.5 5.8e-22 1
CP001016_0671 CDS_759807-761993 76.3 2.4e-21 1
CP001016_3201 CDS_3758703-3756679 69.3 2.4e-19 1
CP001016_2653 CDS_3123350-3121467 69.1 2.6e-19 1
CP001016_0581 CDS_656156-653445 68.5 4.1e-19 1
CP001016_1082 CDS_1263220-1265910 64.8 4.3e-18 1
CP001016_1492 CDS_1717984-1719159 59.5 1.4e-16 1
CP001016_1847 CDS_2145871-2147829 52.0 1.9e-14 1
CP001016_2196 CDS_2565380-2566813 49.5 9.5e-14 1
CP001016_1494 CDS_1720870-1723143 47.0 4.8e-13 1
CP001016_2116 CDS_2462014-2463363 44.9 1.9e-12 1
CP001016_2918 CDS_3436162-3433874 44.2 3.1e-12 1
CP001016_1947 CDS_2267485-2264942 43.1 6.1e-12 1
CP001016_2526 CDS_2956510-2957928 42.8 7.5e-12 1
CP001016_2902 CDS_3405964-3407436 41.3 2.1e-11 1
CP001016_0359 CDS_413757-416798 40.1 4.3e-11 1
CP001016_3445 CDS_4028165-4029535 34.5 1.7e-09 1
CP001016_1128 CDS_1325220-1326593 30.8 1.9e-08 1
CP001016_0181 CDS_218280-220094 29.4 4.6e-08 1
CP001016_3344 CDS_3912553-3911087 28.6 8.1e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001016_1922 1/1 144 209 .. 1 87 [] 104.4 2.7e-29
CP001016_1849 1/1 151 220 .. 1 87 [] 92.4 6.8e-26
CP001016_3136 1/1 113 178 .. 1 87 [] 89.3 5.2e-25
CP001016_1611 1/1 316 385 .. 1 87 [] 88.7 7.3e-25
CP001016_1894 1/1 292 361 .. 1 87 [] 84.1 1.6e-23
CP001016_0960 1/1 677 743 .. 1 87 [] 80.6 1.5e-22
CP001016_3097 1/1 126 193 .. 1 87 [] 80.0 2.1e-22
CP001016_1996 1/1 533 602 .. 1 87 [] 78.5 5.8e-22
CP001016_0671 1/1 499 568 .. 1 87 [] 76.3 2.4e-21
CP001016_3201 1/1 321 393 .. 1 87 [] 69.3 2.4e-19
CP001016_2653 1/1 358 423 .. 1 87 [] 69.1 2.6e-19
CP001016_0581 1/1 660 728 .. 1 87 [] 68.5 4.1e-19
CP001016_1082 1/1 664 732 .. 1 87 [] 64.8 4.3e-18
CP001016_1492 1/1 154 218 .. 1 87 [] 59.5 1.4e-16
CP001016_1847 1/1 429 496 .. 1 87 [] 52.0 1.9e-14
CP001016_2196 1/1 235 301 .. 1 87 [] 49.5 9.5e-14
CP001016_1494 1/1 511 582 .. 1 87 [] 47.0 4.8e-13
CP001016_2116 1/1 223 288 .. 1 87 [] 44.9 1.9e-12
CP001016_2918 1/1 373 440 .. 1 87 [] 44.2 3.1e-12
CP001016_1947 1/1 476 542 .. 1 87 [] 43.1 6.1e-12
CP001016_2526 1/1 248 306 .. 1 87 [] 42.8 7.5e-12
CP001016_2902 1/1 280 344 .. 1 87 [] 41.3 2.1e-11
CP001016_0359 1/1 617 687 .. 1 87 [] 40.1 4.3e-11
CP001016_3445 1/1 252 310 .. 1 87 [] 34.5 1.7e-09
CP001016_1128 1/1 198 293 .. 1 87 [] 30.8 1.9e-08
CP001016_0181 1/1 388 456 .. 1 87 [] 29.4 4.6e-08
CP001016_3344 1/1 241 306 .. 1 87 [] 28.6 8.1e-08

Alignments of top-scoring domains:
CP001016_1922: domain 1 of 1, from 144 to 209: score 104.4, E = 2.7e-29
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+eflan+sHE+RTP+++++g+a+lL tels +q
CP001016_1 144 AKGEFLANMSHEIRTPMNGVIGMAQLLDG---------TELSVQQ-- 179

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey+++il++a+ l rLind+Ld+s+ieag
CP001016_1 180 ----------REYVSIILHSADTLMRLINDVLDFSKIEAG 209

CP001016_1849: domain 1 of 1, from 151 to 220: score 92.4, E = 6.8e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHELRTPL+aI+g++ l+l+el ++ls e
CP001016_1 151 AKSNFLATISHELRTPLNAIIGFSNLILMELM------GPLSNER-- 189

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yreyl+ i ++e+ll++ind+Ldl+++eag
CP001016_1 190 ---------YREYLRDINASGEHLLSIINDILDLTKAEAG 220

CP001016_3136: domain 1 of 1, from 113 to 178: score 89.3, E = 5.2e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ef+a +sHE+RTP+++I+g++elLl+ t l++eq
CP001016_3 113 AKTEFFAKISHEIRTPINGILGLTELLLA---------TGLTPEQ-- 148

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y+e i+ ++ l +L + lLd+s+ieag
CP001016_3 149 ----------KNYVEAIRGSGSALASLTDALLDFSKIEAG 178

CP001016_1611: domain 1 of 1, from 316 to 385: score 88.7, E = 7.3e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++flan+sHELRTPL+aI+g++e+L + ++ ++++ ++
CP001016_1 316 AKDRFLANMSHELRTPLNAIIGFSEMLAD------PQLCPQDPLKQ- 355

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey +i++++e+ll+ +n +Ld+s+i +g
CP001016_1 356 ----------REYAAIIHSSGEHLLHVVNSILDMSKIHSG 385

CP001016_1894: domain 1 of 1, from 292 to 361: score 84.1, E = 1.6e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHELRTPL+aI+g++e+++ el+ ++
CP001016_1 292 AKSRFLATMSHELRTPLNAILGFSEVMKGELF------GAHVISS-- 330

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y++y + i+ ++++ll Lin++Ldlsrieag
CP001016_1 331 ---------YKDYSNDIHASGQHLLTLINEILDLSRIEAG 361

CP001016_0960: domain 1 of 1, from 677 to 743: score 80.6, E = 1.5e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+f+ +lsHELRTPL+aI+gya++L++++ ++
CP001016_0 677 AKSRFVVGLSHELRTPLNAIMGYAQILERDV--------SIPSHR-- 713

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++++++r+ae+l+ Li+ lLd+s+ieag
CP001016_0 714 ----------RNAIRVMHRSAEHLSGLIDGLLDISKIEAG 743

CP001016_3097: domain 1 of 1, from 126 to 193: score 80.0, E = 2.1e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+an+sHELRTPL++++g++e+L+ +++++e ++
CP001016_3 126 MRADFIANASHELRTPLSSLLGFIETLQG---------PAKDDENAR 163

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l +++++a+r+ rLi+dlL lsrie++
CP001016_3 164 ----------IRFLGIMRDQARRMARLIDDLLSLSRIEQN 193

CP001016_1996: domain 1 of 1, from 533 to 602: score 78.5, E = 5.8e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksefl n+sHELRTPL+aI+g++el+ +++l+++
CP001016_1 533 AKSEFLTNMSHELRTPLNAIIGFSELMGQ------EPYGPLGSPR-- 571

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y +y + i++++++ll i+d+Ld+sr+eag
CP001016_1 572 ---------YLDYCNDIRQSGQYLLGVISDVLDMSRLEAG 602

CP001016_0671: domain 1 of 1, from 499 to 568: score 76.3, E = 2.4e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+fla +sHE+RTPL+aI+g++e++ + + ++ + e
CP001016_0 499 LKSDFLAKVSHEIRTPLNAILGFTEVIMD------ERFGPIGNER-- 537

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y++yl+ i+ ++ +L+ndlLdls+ieag
CP001016_0 538 ---------YKDYLKDIHMSGTLVMSLVNDLLDLSKIEAG 568

CP001016_3201: domain 1 of 1, from 321 to 393: score 69.3, E = 2.4e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
f+a++sHEL+ PLt+I+g+aelLl++l+ a +++++ +r
CP001016_3 321 FIATFAAHVSHELKSPLTSIKGAAELLLDDLE---ANPQTMDDNDR- 363

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l+ i +a rl +L+++l+dl+r+e+
CP001016_3 364 ----------RRFLDHIVVDAARLTDLVSRLRDLARAENT 393

CP001016_2653: domain 1 of 1, from 358 to 423: score 69.1, E = 2.6e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + f+a+++HEL++PLt++r ++e+L ++++e +
CP001016_2 358 AIESFAADVAHELKNPLTSLRSAVETLPI----------ARTPESH- 393

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l++i+++++rl+rLi+d+ d sr++a+
CP001016_2 394 ----------QRLLSIIQHDVRRLDRLISDISDASRLDAE 423

CP001016_0581: domain 1 of 1, from 660 to 728: score 68.5, E = 4.1e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+ ++s ELR PLt I+g++e+L e + ++l+e+q
CP001016_0 660 LRNDFVHHVSYELRSPLTNIIGFIEMLGE------GAVGPLNEKQ-- 698

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ey+ + ++ l+++ind+Ldl+ i+a
CP001016_0 699 ----------HEYIGYVMASSSALRAIINDILDLASIDAD 728

CP001016_1082: domain 1 of 1, from 664 to 732: score 64.8, E = 4.3e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s +l ++sH+LRTPL++++g a +L +++ +l++
CP001016_1 664 LRSALLNSISHDLRTPLSTVLGSATTLIDYG-------KTLDSAVS- 702

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++le+i++eaerl+r + +lL ++r+e g
CP001016_1 703 ----------VDLLESIREEAERLNRYVGNLLNMTRLEGG 732

CP001016_1492: domain 1 of 1, from 154 to 218: score 59.5, E = 1.4e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++l+HE+++PL++Irg+a+lL++ ++++ +
CP001016_1 154 SVAAMASMLAHEIKNPLSGIRGAAQLLET----------DANDND-- 188

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +++ i +e++r+ +L++++ +s +
CP001016_1 189 ----------RALTQLICEETDRIVKLVDRMSAFSDQRPI 218

CP001016_1847: domain 1 of 1, from 429 to 496: score 52.0, E = 1.9e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++a+++HELR+PL aI+ ++ +L+e + ++++ +
CP001016_1 429 TIGQLTATVAHELRNPLGAIKNTVFTLKELS-------GAKNLKL-- 466

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +++r+++r++++i lL++sr a
CP001016_1 467 ----------DRPIARMERSVDRCNSIITHLLEYSRVSAL 496

CP001016_2196: domain 1 of 1, from 235 to 301: score 49.5, E = 9.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ e n++H+L+TPLt +r +e +l+ ++s+e+
CP001016_2 235 GLKEVSDNIAHDLKTPLTRLRNGTEEALR---------LAKSPEE-- 270

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr +le++++e++rl ++ + lL ++ +eag
CP001016_2 271 ---------YRGALEKVIEESDRLIQIFDALLMIAGAEAG 301

CP001016_1494: domain 1 of 1, from 511 to 582: score 47.0, E = 4.8e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++ ++HE+++PLt I++ ae L++++ g+ + ++
CP001016_1 511 AWADVARRIAHEIKNPLTPIQLSAERLKRKY-----GRVIVQDRDI- 551

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++ti r+++ + r+++++ ++r+
CP001016_1 552 ---------FDQCIDTIVRQVDDIKRMVDEFSSFARMPKA 582

CP001016_2116: domain 1 of 1, from 223 to 288: score 44.9, E = 1.9e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f+ n +HELR+P++++++ +++L + l q
CP001016_2 223 TERMFATNSAHELRNPIAGLLAQTQILND----------QLKGSQ-- 257

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y + i ++++r++rL + lL+lsr+ +g
CP001016_2 258 ---------YGARTLAIVQQTKRISRLTEKLLQLSRATSG 288

CP001016_2918: domain 1 of 1, from 373 to 440: score 44.2, E = 3.1e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lta++g++elL + + + +++
CP001016_2 373 AIGQLTGGIAHDFNNLLTAVLGNLELLSR-------HVEGGDAKL-- 410

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++ +l++a+r +L +lL +sr +
CP001016_2 411 ----------QRWTRNALEAAKRGASLTARLLAFSRRQPL 440

CP001016_1947: domain 1 of 1, from 476 to 542: score 43.1, E = 6.1e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ LtaI+gy++lLl++ + +++
CP001016_1 476 AIGQLAGGVAHDFNNVLTAIIGYSDLLLAN--------QRPTDPS-- 512

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + i++ a+r L+++lL +sr ++
CP001016_1 513 ----------FQDIMQIKQNANRAAGLVRQLLAFSRRQTL 542

CP001016_2526: domain 1 of 1, from 248 to 306: score 42.8, E = 7.5e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la++sH+LRTPLt Ir+ e +++
CP001016_2 248 DRTTMLAAISHDLRTPLTRIRLRGEFIED------------------ 276

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ r+++ ++++++ L + r +a
CP001016_2 277 ----------HGQRTRLFRDVDEMQAMVDGALAFFRDDAL 306

CP001016_2902: domain 1 of 1, from 280 to 344: score 41.3, E = 2.1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++ +a+++HE+R+P++a+r+ ae + + se +
CP001016_2 280 AIGRVAAGVAHEIRNPIAAMRLKAENAMA----------GDSERK-- 314

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l +l ++erl++L+++lL + e+
CP001016_2 315 ----------NLALTMMLGQIERLDALVRRLLSVTERETL 344

CP001016_0359: domain 1 of 1, from 617 to 687: score 40.1, E = 4.3e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++ +++++H++++ Lt+I+g+++lL++ + +d+ ++++++
CP001016_0 617 AIGQVTSGVAHDFNNLLTVILGNLDLLEKSV-----IDPVRGDPKT- 657

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l+ ++ ++er +L +lL +sr +
CP001016_0 658 ----------KRRLDNMRMAGERGAKLTGQLLAFSRRQRL 687

CP001016_3445: domain 1 of 1, from 252 to 310: score 34.5, E = 1.7e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l ++sH+LRT Lt ++ + l+ + +++
CP001016_3 252 TRTAMLNGVSHDLRTILTRFKLSLALMPD-------------SDE-- 283

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++++e ++r+++ L ++r +ag
CP001016_3 284 -------------SRDLEKDVEEMQRMLEAYLAFARGDAG 310

CP001016_1128: domain 1 of 1, from 198 to 293: score 30.8, E = 1.9e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldk.......v.lagdt
++++++a+++HEL++P++ + g+a++L +++ + + ++++ +
CP001016_1 198 SLGRLVAGVAHELNNPISFVYGNAHTLHRYARRlaayldaLhALPAS 244

elseeqrlpeLR..ledpeyreyletilreaerllrLindlLdlsrieag
++ +eqr LR + e + l i + aer ++++ dl+ +s +
CP001016_1 245 PQLAEQR-QTLRidMIMTELEGVLAGIVDGAERVRDIVADLRRFSSDRRD 293

<-*

CP001016_1 - -

CP001016_0181: domain 1 of 1, from 388 to 456: score 29.4, E = 4.6e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +a+++HE ++P++aIr++ae + l + ++
CP001016_0 388 VLGQIAASVAHEVNQPVAAIRTFAENSQVLL-------IRGDTGTA- 426

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l+ti +er+ + ++l+ +sr +
CP001016_0 427 ----------RINLSTIAGLTERIGTIMDELRAFSRKTTS 456

CP001016_3344: domain 1 of 1, from 241 to 306: score 28.6, E = 8.1e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ n++H+LRTPL+ + + +e l+ +ee++
CP001016_3 241 QIKSVGDNIAHDLRTPLALMCARLERGLD----------SENEEDL- 276

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re + +lr+++r l i lL +s ie+g
CP001016_3 277 ----------RENAQLALRDLDRALMTITTLLRMSEIENG 306


Histogram of all scores:
score obs exp (one = represents 13 sequences)
----- --- ---
-14 12 0|=
-13 41 2|*===
-12 131 81|======*====
-11 317 423|========================= *
-10 586 784|============================================== *
-9 741 810|========================================================= *
-8 606 606|==============================================*
-7 477 382|=============================*=======
-6 274 220|================*=====
-5 149 120|=========*==
-4 96 64|====*===
-3 42 34|==*=
-2 29 17|=*=
-1 17 9|*=
0 11 4|*
1 4 2|*
2 3 1|*
3 2 0|=
4 1 0|=
> 5 30 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 186.2569
P(chi-square) = 5.225e-34

Total sequences searched: 3569

Whole sequence top hits:
tophits_s report:
Total hits: 27
Satisfying E cutoff: 27
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 27
Satisfying E cutoff: 27
Total memory: 31K


Acknowledgements:

This research is funded by:

Developed by: