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Classification of phyla is from NCBI page
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2 accessions found for Coxiella burnetii CbuK_Q154  

Data for CP001020  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001020.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001020_0841 CDS_898821-896770 94.2 1.1e-26 1
CP001020_0502 CDS_512935-512177 86.4 1.8e-24 1
CP001020_1442 CDS_1566259-1564604 76.4 1.2e-21 1
CP001020_0229 CDS_222922-224895 56.4 5.7e-16 1
CP001020_0957 CDS_1043136-1044572 55.2 1.3e-15 1
CP001020_1825 CDS_1975256-1973979 46.5 3.6e-13 1
CP001020_0588 CDS_605219-607714 44.8 1.1e-12 2

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001020_0841 1/1 305 370 .. 1 87 [] 94.2 1.1e-26
CP001020_0502 1/1 27 94 .. 1 87 [] 86.4 1.8e-24
CP001020_1442 1/1 178 243 .. 1 87 [] 76.4 1.2e-21
CP001020_0229 1/1 140 205 .. 1 87 [] 56.4 5.7e-16
CP001020_0957 1/1 253 318 .. 1 87 [] 55.2 1.3e-15
CP001020_1825 1/1 217 275 .. 1 87 [] 46.5 3.6e-13
CP001020_0588 1/2 292 316 .. 1 25 [. 35.6 4.4e-10

Alignments of top-scoring domains:
CP001020_0841: domain 1 of 1, from 305 to 370: score 94.2, E = 1.1e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+fla++sHELRTPL+aI+g++++L++ ++ls+eq
CP001020_0 305 TKSDFLAMMSHELRTPLNAILGMSQILKT---------HNLSDEQ-- 340

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++i ++++ ll+L+ndlLd++++eag
CP001020_0 341 ----------QGQIDVISQAGQNLLALLNDLLDFAKLEAG 370

CP001020_0502: domain 1 of 1, from 27 to 94: score 86.4, E = 1.8e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s+f+an+sHELRTPLt+Irgy+e+Ll+ + ++++
CP001020_0 27 IRSDFVANVSHELRTPLTVIRGYLETLLK--------KEVRDSKS-- 63

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+++++ +++ + r++ +i+dlL lsr+e+
CP001020_0 64 ---------YQKIFQQMYQHSARMETIIDDLLLLSRLESD 94

CP001020_1442: domain 1 of 1, from 178 to 243: score 76.4, E = 1.2e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksef+an+sH+LRTP+++I+g a++ + +e + +q
CP001020_1 178 AKSEFIANISHDLRTPINGILGIAQIFNM---------HEHTKKQ-- 213

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ + +a+ ll L++d+Ld++r+e g
CP001020_1 214 ----------EPLINDLSASANLLLGLVEDILDFARLEVG 243

CP001020_0229: domain 1 of 1, from 140 to 205: score 56.4, E = 5.7e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+ H+LRTPLt+I++ ae L + +++ee+
CP001020_0 140 VKSEFLANMGHDLRTPLTGIILIAEYLWK----------KQTEEKD- 175

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + ++ ++++ll+ in++L+++ eag
CP001020_0 176 ----------KQLSKNLILAGKQLLHFINEVLEITNVEAG 205

CP001020_0957: domain 1 of 1, from 253 to 318: score 55.2, E = 1.3e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+a+++HELRTPL+a+ ++++++l+ ++++e+r
CP001020_0 253 REKRFTADAAHELRTPLAALNTHTQVALR----------AKTPEER- 288

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l ++l ++r + +++lL+l r+ +
CP001020_0 289 ----------KEALLKVLAGVNRGTHVVQQLLTLNRMVPE 318

CP001020_1825: domain 1 of 1, from 217 to 275: score 46.5, E = 3.6e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++la++sH+LRTP+t +++ a+ L +
CP001020_1 217 NRTQMLAAISHDLRTPITRMKLRAQFLDD------------------ 245

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++++ ++ +in+ L ++r +
CP001020_1 246 ----------STTRNALVKDLNEMEVMINETLSFARDDFA 275

CP001020_0588: domain 1 of 2, from 292 to 316: score 35.6, E = 4.4e-10
*->akseflanlsHELRTPLtaIrgyae<-*
aksef+an+sH++RTP+++++g+++
CP001020_0 292 AKSEFIANMSHDIRTPIAGMLGMLQ 316


Histogram of all scores:
score obs exp (one = represents 6 sequences)
----- --- ---
-15 5 0|=
-14 35 0|======
-13 84 1|*=============
-12 159 43|=======*===================
-11 209 225|=================================== *
-10 327 418|======================================================= *
-9 325 432|======================================================= *
-8 275 323|============================================== *
-7 202 204|=================================*
-6 104 117|================== *
-5 62 64|==========*
-4 55 34|=====*====
-3 18 18|==*
-2 16 9|=*=
-1 9 4|*=
0 4 2|*
1 3 1|*
2 3 0|=
3 2 0|=
4 0 0|
> 5 8 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 379.9548
P(chi-square) = 0

Total sequences searched: 1905

Whole sequence top hits:
tophits_s report:
Total hits: 7
Satisfying E cutoff: 7
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 7
Satisfying E cutoff: 7
Total memory: 23K


Acknowledgements:

This research is funded by:

Developed by: