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Classification of phyla is from NCBI page
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76 projects found  

4 accessions found for Burkholderia ambifaria MC40-6  

Data for CP001025  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001025.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001025_1600 CDS_1812949-1816671 98.4 1.2e-27 1
CP001025_1183 CDS_1320084-1321403 93.6 2.7e-26 1
CP001025_1223 CDS_1366227-1369196 92.6 4.9e-26 1
CP001025_2177 CDS_2454113-2451276 67.5 6.4e-19 1
CP001025_2549 CDS_2858135-2859694 67.3 7.6e-19 1
CP001025_2036 CDS_2298857-2297715 61.2 4.1e-17 1
CP001025_2511 CDS_2818777-2817440 58.8 2e-16 1
CP001025_0072 CDS_84644-83160 58.7 2.1e-16 1
CP001025_2286 CDS_2572713-2571397 54.1 4.2e-15 1
CP001025_0031 CDS_44230-42863 51.1 3e-14 1
CP001025_1248 CDS_1396055-1394685 47.8 2.4e-13 1
CP001025_2026 CDS_2282959-2285475 42.8 6.6e-12 1
CP001025_1975 CDS_2227174-2226059 41.8 1.2e-11 1
CP001025_1833 CDS_2067123-2068484 40.2 3.5e-11 1
CP001025_3032 CDS_3398938-3396536 38.6 9.9e-11 1
CP001025_1224 CDS_1369199-1370359 38.3 1.2e-10 1
CP001025_2763 CDS_3091367-3089334 34.4 1.6e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001025_1600 1/1 562 627 .. 1 87 [] 98.4 1.2e-27
CP001025_1183 1/1 206 272 .. 1 87 [] 93.6 2.7e-26
CP001025_1223 1/1 539 605 .. 1 87 [] 92.6 4.9e-26
CP001025_2177 1/1 678 754 .. 1 87 [] 67.5 6.4e-19
CP001025_2549 1/1 283 348 .. 1 87 [] 67.3 7.6e-19
CP001025_2036 1/1 152 220 .. 1 87 [] 61.2 4.1e-17
CP001025_2511 1/1 213 278 .. 1 87 [] 58.8 2e-16
CP001025_0072 1/1 240 305 .. 1 87 [] 58.7 2.1e-16
CP001025_2286 1/1 220 278 .. 1 87 [] 54.1 4.2e-15
CP001025_0031 1/1 235 301 .. 1 87 [] 51.1 3e-14
CP001025_1248 1/1 207 272 .. 1 87 [] 47.8 2.4e-13
CP001025_2026 1/1 588 658 .. 1 87 [] 42.8 6.6e-12
CP001025_1975 1/1 149 214 .. 1 87 [] 41.8 1.2e-11
CP001025_1833 1/1 234 293 .. 1 87 [] 40.2 3.5e-11
CP001025_3032 1/1 537 609 .. 1 87 [] 38.6 9.9e-11
CP001025_1224 1/1 162 230 .. 1 87 [] 38.3 1.2e-10
CP001025_2763 1/1 428 490 .. 1 81 [. 34.4 1.6e-09

Alignments of top-scoring domains:
CP001025_1600: domain 1 of 1, from 562 to 627: score 98.4, E = 1.2e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla +sHE+RTP+++++g++elL++ t l+++q
CP001025_1 562 AKSDFLARMSHEIRTPMNGVLGMTELLQR---------TRLTSKQ-- 597

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++++t++r+++ ll +i+d+Ld+s+ieag
CP001025_1 598 ----------RKFVDTVYRSGQTLLVIIDDILDFSKIEAG 627

CP001025_1183: domain 1 of 1, from 206 to 272: score 93.6, E = 2.7e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+an+sHEL+TPLt+++g++e+++e +l+ee+r
CP001025_1 206 MRRDFVANVSHELKTPLTVLSGFLETMRE---------LPLNEEDR- 242

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yle ++++a r+++++ dlL l+++e +
CP001025_1 243 ----------ARYLEMMEQQASRMRHIVTDLLVLAKLEGE 272

CP001025_1223: domain 1 of 1, from 539 to 605: score 92.6, E = 4.9e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++flan+sHELRTPL++I+gya++L++++ l+ q
CP001025_1 539 AKDQFLANISHELRTPLNGILGYAQILQRDV--------RLDTRQ-- 575

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +i++++++ll Lind+Ld++r++ag
CP001025_1 576 ----------LASVGVIEQSGQHLLTLINDILDFARLGAG 605

CP001025_2177: domain 1 of 1, from 678 to 754: score 67.5, E = 6.4e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l+++sH+LRTPLt+I g++++L + + +++++
CP001025_2 678 LRNSLLSAISHDLRTPLTTIVGFSSMLAN---------ARGAAPHTP 715

peLR....ledpeyreyletilreaerllrLindlLdlsrieag<-*
+ R+ +++ e+++ i++ea r+ ++ +lLd++r++ag
CP001025_2 716 AADRsaqrE-----GELVDAIHDEALRMTGIVTNLLDMARLQAG 754

CP001025_2549: domain 1 of 1, from 283 to 348: score 67.3, E = 7.6e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+a+++H+++TPL+++r+ ae +l+ ++ +++
CP001025_2 283 LQKRFIADAAHQMKTPLAGLRTQAEFALR---------HPVPPDV-- 318

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ le i ++e+ rL+ +lL l+r+e+
CP001025_2 319 ----------QRSLEQIATSSEQAARLVTQLLALARAENR 348

CP001025_2036: domain 1 of 1, from 152 to 220: score 61.2, E = 4.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++nl+HE+++PL +Irg+a+lL+ else +r
CP001025_2 152 VNKQLIRNLAHEIKNPLGGIRGAAQLLEF----------ELSERER- 187

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e rey+++i++e++rl+ L+++lL+ r +
CP001025_2 188 -------GELREYTQVIIKESDRLQTLVDRLLEPHRHPHI 220

CP001025_2511: domain 1 of 1, from 213 to 278: score 58.8, E = 2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f+a+++HELRTPL+a++ a+l + ++++ r
CP001025_2 213 TQKAFVADAAHELRTPLAAVQIQAQLVAR----------AKDDTSR- 248

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re++ +++ + r rL ++lL l+r+e
CP001025_2 249 ----------REAIADLQDGVSRATRLTEQLLALARAEPD 278

CP001025_0072: domain 1 of 1, from 240 to 305: score 58.7, E = 2.1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+a+++H+LRTPLta++++ae + +++++q+
CP001025_0 240 AQRKFIADAAHQLRTPLTAVKLHAEQAAV----------ARDPQQT- 275

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ++ +a+r rL n+lL l+r+e g
CP001025_0 276 ----------YAAVRELRAAADRAVRLSNQLLSLARAEPG 305

CP001025_2286: domain 1 of 1, from 220 to 278: score 54.1, E = 4.2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +la+++H+LRTPL+ +r+ ae++ +
CP001025_2 220 DRAVMLAGVAHDLRTPLARMRLRAEMMDD------------------ 248

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + + r++++++++++++L ++ +a
CP001025_2 249 ----------ARLRDGVVRDVDSMSHIVDQFLAFAHGGAD 278

CP001025_0031: domain 1 of 1, from 235 to 301: score 51.1, E = 3e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+a+++H+LRTP++++ + ++ ++ +++ +++
CP001025_0 235 TQRRFIADAAHQLRTPIAVLDTQIQYAQQ--------RGNGDPDL-- 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l++++r+++ + + + lL l+ +ea
CP001025_0 272 ----------ASVLDSMQRSSRKMADVTDKLLLLAHAEAT 301

CP001025_1248: domain 1 of 1, from 207 to 272: score 47.8, E = 2.4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++ ++sHEL+TPL+ + + + lL e ++ s
CP001025_1 207 QQREMMHGISHELKTPLARLEFGLALLAE---------SDESGRM-- 242

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re + ++r+++ l++L+ +lL++ r+e+g
CP001025_1 243 ----------RERRDELRRDVRELDELVTELLTIGRLEQG 272

CP001025_2026: domain 1 of 1, from 588 to 658: score 42.8, E = 6.6e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++++++HEL++PL+aI y++ l+ l +++ ++e++
CP001025_2 588 TMGEMASSIAHELNQPLAAINNYCSGTLA-----LVKSGRGTPETL- 628

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +le+ ++a r ++ +++++ + ++
CP001025_2 629 ----------QPALEKTAQQALRAGMIVKRIREFVKRSEP 658

CP001025_1975: domain 1 of 1, from 149 to 214: score 41.8, E = 1.2e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +l +l H++RTPL +I +a+ L + +++e
CP001025_1 149 SRNLLLGMLGHDMRTPLQTIHVTASYLAA---------LNAGEAV-- 184

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +++r++ r++ L++dl d+ r + g
CP001025_1 185 ----------SDAAARLIRSGSRMQGLLDDLCDYNRTQLG 214

CP001025_1833: domain 1 of 1, from 234 to 293: score 40.2, E = 3.5e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +la++sH+LRTPL+ +r+ +e+ +
CP001025_1 234 DRALMLAGISHDLRTPLARLRLETEMSPSD----------------- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + +++e+++r+i + d++r +
CP001025_1 264 ----------QATKDAMVDDIEQMDRIIAAFIDYARPSQR 293

CP001025_3032: domain 1 of 1, from 537 to 609: score 38.6, E = 9.9e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e ++ l+HE+++PLt I++ ae L+++l +++l +++ +
CP001025_3 537 AWGEVARRLAHEIKNPLTPIQLSAERLQMKL------SDKLAPPD-A 576

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ L ++ i +++ + r+++d+++++r
CP001025_3 577 DVL-------KRGATMIVNQVAAMKRMVDDFREYARTPPA 609

CP001025_1224: domain 1 of 1, from 162 to 230: score 38.3, E = 1.2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +++H+LRTPLt +r +e+Ll +l ++++e++
CP001025_1 162 GVRNVSNAIAHDLRTPLTELRSRLEVLLLGL-------RKKGDEDT- 200

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le++ +++r + n lL l+ i+ag
CP001025_1 201 ----------LGQLEVAMADVDRVIGIFNALLRLAEIDAG 230

CP001025_2763: domain 1 of 1, from 428 to 490: score 34.4, E = 1.6e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a++ HEL++PL+a+r +++ + +++e+ ++
CP001025_2 428 ALGQMAAGITHELNQPLAALRSFSDNTRV--------LLDRGEQAAA 466

peLRledpeyreyletilreaerllrLindlLdl<-*
re le i +er+ ++ n+l +
CP001025_2 467 ----------RENLEAIAALTERMGKITNQLKLF 490


Histogram of all scores:
score obs exp (one = represents 10 sequences)
----- --- ---
-14 9 0|=
-13 36 2|*===
-12 128 70|======*======
-11 278 364|============================ *
-10 500 676|================================================== *
-9 589 698|==========================================================*
-8 531 522|====================================================*=
-7 406 329|================================*========
-6 254 189|==================*=======
-5 158 103|==========*=====
-4 79 55|=====*==
-3 34 29|==*=
-2 23 15|=*=
-1 13 8|*=
0 8 4|*
1 4 2|*
2 1 1|*
3 0 0|
4 2 0|=
5 0 0|
6 0 0|
> 7 21 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 215.9611
P(chi-square) = 6.781e-310

Total sequences searched: 3074

Whole sequence top hits:
tophits_s report:
Total hits: 17
Satisfying E cutoff: 17
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 17
Satisfying E cutoff: 17
Total memory: 27K


Acknowledgements:

This research is funded by:

Developed by: