Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
76 projects found  

4 accessions found for Burkholderia ambifaria MC40-6  

Data for CP001026  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001026.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001026_0180 CDS_191881-194985 87.1 1.4e-24 1
CP001026_0183 CDS_196457-199555 80.9 8.4e-23 1
CP001026_1145 CDS_1316837-1318828 72.5 2e-20 1
CP001026_1072 CDS_1233737-1232289 67.0 7.1e-19 1
CP001026_0238 CDS_259566-258151 60.5 5.1e-17 1
CP001026_1030 CDS_1182159-1183550 60.0 6.8e-17 1
CP001026_1756 CDS_2033038-2031908 58.0 2.5e-16 1
CP001026_1745 CDS_2011096-2012472 56.5 6.7e-16 1
CP001026_0195 CDS_214336-212516 52.3 1e-14 1
CP001026_1496 CDS_1729671-1727482 50.3 3.9e-14 1
CP001026_1493 CDS_1719815-1725325 45.1 1.1e-12 1
CP001026_0131 CDS_141505-139913 43.5 3.3e-12 1
CP001026_0639 CDS_721732-720953 42.9 4.8e-12 1
CP001026_2088 CDS_2421013-2422908 32.2 5.1e-09 1
CP001026_0384 CDS_424444-423023 29.7 2.7e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001026_0180 1/1 500 565 .. 1 87 [] 87.1 1.4e-24
CP001026_0183 1/1 521 586 .. 1 87 [] 80.9 8.4e-23
CP001026_1145 1/1 285 350 .. 1 87 [] 72.5 2e-20
CP001026_1072 1/1 234 301 .. 1 87 [] 67.0 7.1e-19
CP001026_0238 1/1 250 316 .. 1 87 [] 60.5 5.1e-17
CP001026_1030 1/1 240 305 .. 1 87 [] 60.0 6.8e-17
CP001026_1756 1/1 161 226 .. 1 87 [] 58.0 2.5e-16
CP001026_1745 1/1 233 298 .. 1 87 [] 56.5 6.7e-16
CP001026_0195 1/1 235 300 .. 1 87 [] 52.3 1e-14
CP001026_1496 1/1 501 571 .. 1 87 [] 50.3 3.9e-14
CP001026_1493 1/1 1612 1682 .. 1 87 [] 45.1 1.1e-12
CP001026_0131 1/1 157 225 .. 1 87 [] 43.5 3.3e-12
CP001026_0639 1/1 28 95 .. 1 87 [] 42.9 4.8e-12
CP001026_2088 1/1 398 466 .. 1 87 [] 32.2 5.1e-09
CP001026_0384 1/1 241 298 .. 1 79 [. 29.7 2.7e-08

Alignments of top-scoring domains:
CP001026_0180: domain 1 of 1, from 500 to 565: score 87.1, E = 1.4e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTPL++I+g++elL++ ++l++ q
CP001026_0 500 AKSSFLAAMSHEIRTPLNVILGNLELLER---------SALDATQ-- 535

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++t++ +a +ll+L++d+Ld+s+ieag
CP001026_0 536 ----------HGRVRTLHASATSLLALVSDILDFSKIEAG 565

CP001026_0183: domain 1 of 1, from 521 to 586: score 80.9, E = 8.4e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTPL+aI+g++el+++ + + +
CP001026_0 521 AKSTFLATMSHEIRTPLNAIIGNLELMER---------AQMAVPL-- 556

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l ti ++++ llr ind+Ldls++e++
CP001026_0 557 ----------RRRLGTIMSSSDALLRVINDVLDLSKAESN 586

CP001026_1145: domain 1 of 1, from 285 to 350: score 72.5, E = 2e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+e+la++sHELRTPL++I g +e+L+ +e
CP001026_1 285 MKDELLATVSHELRTPLNVIYGWVEVLRS---------GEGQGFA-- 320

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ i+r+a++l+r++ dlLd s + +g
CP001026_1 321 ----------HQAIDAIDRSARSLSRMVGDLLDASSLATG 350

CP001026_1072: domain 1 of 1, from 234 to 301: score 67.0, E = 7.1e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f a+++HELRTP++ ++g ++++l+ + ++s + +
CP001026_1 234 RLEAFNADVAHELRTPISILIGQTQVALT--------SRDRSVDRM- 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l++ l+e erl+ +ind+L lsr + g
CP001026_1 272 ----------RQTLQSNLEEFERLRVIINDMLFLSRSDRG 301

CP001026_0238: domain 1 of 1, from 250 to 316: score 60.5, E = 5.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f ++l+H++RTPL+ ++ +++ l +++ e+
CP001026_0 250 RLSQFSSDLAHDMRTPLANVISSSQVTLS---------RARTTEE-- 285

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ ++++ ++e erl+r+i+++L l+r ++
CP001026_0 286 ---------YEALIDSNIEECERLQRMIENMLFLARTDNA 316

CP001026_1030: domain 1 of 1, from 240 to 305: score 60.0, E = 6.8e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+a+++H+L+TPL+a+++ +el+l+ ++ +
CP001026_1 240 ARRRFFADAAHQLKTPLAAVQAGVELALR---------PAEQPRV-- 275

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+++ ++++ +++++lL lsr+++
CP001026_1 276 ----------NVHLRRVNGAVRQAAKIVQQLLSLSRLDSD 305

CP001026_1756: domain 1 of 1, from 161 to 226: score 58.0, E = 2.5e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++ ++sHELRTPL+ +r+++e+L+e ++s+ +
CP001026_1 161 AQRDLTNGISHELRTPLARVRFALEMLRE----------PASAAE-- 195

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ +le+i +++ l++Li+ L+++r+e
CP001026_1 196 ---------YHGALESIAQDVTELEELIDMSLTYARLEYS 226

CP001026_1745: domain 1 of 1, from 233 to 298: score 56.5, E = 6.7e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+a+++HELRTP+ +++ ++lL++ ++ s+e
CP001026_1 233 LQRHFIADAAHELRTPIMGLSIQSQLLRR---------AASSDER-- 268

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l i+ + rl +L ++lL+l+r+e
CP001026_1 269 ----------EQILAQIHAGTTRLGHLAEQLLTLARLEPD 298

CP001026_0195: domain 1 of 1, from 235 to 300: score 52.3, E = 1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ fl ++sHELRTPL aI g +e+Ll+ ++s+
CP001026_0 235 AKNAFLGMVSHELRTPLQAICGSIEILLA---------RPQSDAN-- 270

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++++++a +l++L+ dl d+ ++++
CP001026_0 271 ----------LKTIRRLQNSALSLEALVKDLTDYIKLRST 300

CP001026_1496: domain 1 of 1, from 501 to 571: score 50.3, E = 3.9e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++a+++HE +PL+aI ++ +++l+ + +++e+++
CP001026_1 501 MLGELAASIAHEVTQPLAAIVTAGDAALR--------WIDRPEPDL- 538

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+++ + ++r+a+r +++i++++ ++r +a+
CP001026_1 539 -------GEVQQSVAQMIRDAKRASDIIRQIRAMARKRAP 571

CP001026_1493: domain 1 of 1, from 1612 to 1682: score 45.1, E = 1.1e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++a++sHE ++P++a++++a+++l++l + +++ + +
CP001026_1 1612 TVGQLTAMISHEVKQPIAAMSANADAALRWL-----SARPANVDRA- 1652

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++le i r++ r ++i++++ l r
CP001026_1 1653 ----------ARALELIVRDTLRTGDIIDRIRNLVRKSPV 1682

CP001026_0131: domain 1 of 1, from 157 to 225: score 43.5, E = 3.3e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+a+l+HELR+ L+ +r ++ +L+ l++ ++
CP001026_0 157 RLDVFIATLAHELRNQLAPLRHTIGILQG-----------LPASELG 192

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
p+L + ++++r++e+l rL++dlLd+ ri +
CP001026_0 193 PAL-------TQCKDIADRQIEQLVRLVDDLLDIGRIKSD 225

CP001026_0639: domain 1 of 1, from 28 to 95: score 42.9, E = 4.8e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ l+++sH+LR PL+a+ a +L+++l + +++
CP001026_0 28 LRDQALSTASHDLRSPLNAMHSWAYVLERQL-------ASADPSL-- 65

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l i+ +++ +Li+d+Ld r+e+
CP001026_0 66 ----------QRALAGIRTGIDQQVALIDDVLDAPRAETR 95

CP001026_2088: domain 1 of 1, from 398 to 466: score 32.2, E = 5.1e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++a+l HEL++PL aIr++++ ++++++ ++++
CP001026_2 398 VLGQMAAGLTHELNQPLVAIRTLCDNARTFFE------RGQPAPA-- 436

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+i + ++++ L +l +++r
CP001026_2 437 ----------YANLERIGKLVDSMAVLTGELKTFARKPDV 466

CP001026_0384: domain 1 of 1, from 241 to 298: score 29.7, E = 2.7e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+a+++H++RTPL+ + + +elL ++ ++ +
CP001026_0 241 AMQRFIADAAHQMRTPLARLDAQIELLDG---------EADPARH-- 276

peLRledpeyreyletilreaerllrLindlL<-*
+ l+ ++ + rL +lL
CP001026_0 277 ----------AARLDALRATSADVGRLTGQLL 298


Histogram of all scores:
score obs exp (one = represents 9 sequences)
----- --- ---
-15 2 0|=
-14 7 0|=
-13 26 1|*==
-12 80 54|=====*===
-11 212 282|======================== *
-10 392 523|============================================ *
-9 475 540|===================================================== *
-8 455 404|============================================*======
-7 301 255|============================*=====
-6 195 146|================*=====
-5 99 80|========*==
-4 52 43|====*=
-3 28 22|==*=
-2 19 11|=*=
-1 7 6|*
0 2 3|*
1 3 1|*
2 5 0|=
> 3 22 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 112.3583
P(chi-square) = 6.187e-19

Total sequences searched: 2382

Whole sequence top hits:
tophits_s report:
Total hits: 15
Satisfying E cutoff: 15
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 15
Satisfying E cutoff: 15
Total memory: 26K


Acknowledgements:

This research is funded by:

Developed by: