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Classification of phyla is from NCBI page
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4 accessions found for Burkholderia ambifaria MC40-6  

Data for CP001027  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001027.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001027_0861 CDS_995314-993002 76.4 6.2e-22 1
CP001027_0726 CDS_839552-841744 75.1 1.5e-21 1
CP001027_0226 CDS_267740-266259 73.8 3.3e-21 1
CP001027_0702 CDS_814335-815723 69.7 4.9e-20 1
CP001027_0033 CDS_47093-45597 63.5 2.9e-18 1
CP001027_0406 CDS_472246-469913 53.5 2e-15 1
CP001027_0877 CDS_1012534-1014120 52.2 4.4e-15 1
CP001027_0458 CDS_533099-534907 41.9 3.8e-12 2
CP001027_0962 CDS_1123522-1118465 37.8 5.3e-11 1
CP001027_0959 CDS_1116941-1115814 31.7 2.9e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001027_0861 1/1 394 459 .. 1 87 [] 76.4 6.2e-22
CP001027_0726 1/1 350 414 .. 1 87 [] 75.1 1.5e-21
CP001027_0226 1/1 269 335 .. 1 87 [] 73.8 3.3e-21
CP001027_0702 1/1 236 301 .. 1 87 [] 69.7 4.9e-20
CP001027_0033 1/1 267 335 .. 1 87 [] 63.5 2.9e-18
CP001027_0406 1/1 443 507 .. 1 87 [] 53.5 2e-15
CP001027_0877 1/1 157 223 .. 1 87 [] 52.2 4.4e-15
CP001027_0962 1/1 1462 1532 .. 1 87 [] 37.8 5.3e-11
CP001027_0959 1/1 149 207 .. 1 87 [] 31.7 2.9e-09

Alignments of top-scoring domains:
CP001027_0861: domain 1 of 1, from 394 to 459: score 76.4, E = 6.2e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+e+la++sHELRTPL++I g +e+L++ t ++ +
CP001027_0 394 LKDELLATVSHELRTPLNVIYGWIEVLRN---------TRDDALE-- 429

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ i+r+a++l r++ d+Ld s + +g
CP001027_0 430 ----------QQAIDAIDRSARSLTRMVGDILDASSLATG 459

CP001027_0726: domain 1 of 1, from 350 to 414: score 75.1, E = 1.5e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++fla l HELR+PLt I++++el+++ +d+ +++ +
CP001027_0 350 AKDQFLAVLGHELRNPLTPISLALELIRN-------RDGQATPNE-- 387

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +i+r+++++ rLi+dlLd sri g
CP001027_0 388 -------------IAIIQRQLDHMVRLIDDLLDVSRITRG 414

CP001027_0226: domain 1 of 1, from 269 to 335: score 73.8, E = 3.3e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s+f a+l+H+LRTPL+ +rg++e++l+ ++s+ +
CP001027_0 269 HLSQFSADLAHDLRTPLNNMRGATEVALA---------RPRSPGE-- 304

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ +le+ l+e +rl r+i+++L l+r+e++
CP001027_0 305 ---------YQALLESNLEEYDRLARMIENVLFLARAEHP 335

CP001027_0702: domain 1 of 1, from 236 to 301: score 69.7, E = 4.9e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++f+a+++HELRTP++a+++ a+++ + e ++e r
CP001027_0 236 AERRFTADAAHELRTPISAVKAQAQVAMA----------EPDDERR- 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +l+ +l+ +r rL+++lL lsr++ag
CP001027_0 272 ----------RHALRGVLEGCDRAARLVDQLLLLSRLDAG 301

CP001027_0033: domain 1 of 1, from 267 to 335: score 63.5, E = 2.9e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++ n+sH+LRTPLt++ gy+e+L ++ ++l e +r
CP001027_0 267 QRRELITNISHDLRTPLTSLHGYLETLSLKS-------DTLAETER- 305

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+yl+++l ++ rL + l +l+r+e+g
CP001027_0 306 ----------RRYLSIALAQSTKVGRLAQALFELARLESG 335

CP001027_0406: domain 1 of 1, from 443 to 507: score 53.5, E = 2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k e l ++sH+LR PL++I gya+lLl ++ q
CP001027_0 443 QKIETLGYVSHDLRAPLSTINGYAKLLLQ----------SATRSQ-- 477

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++i+r++++ l Li++lL++++ e +
CP001027_0 478 ----------ARLIRSIDRSIRYQLTLIDELLQYTKSELQ 507

CP001027_0877: domain 1 of 1, from 157 to 223: score 52.2, E = 4.4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s f+a+l+HELR+ L+ +r +++L++ + +++ +
CP001027_0 157 RLSVFIAMLAHELRNHLAPLRHSVSVLQT---------LPDPAPML- 193

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + ++r++ +l rL++dlLd ri ag
CP001027_0 194 ----------AQCRDAVHRQVGQLTRLVDDLLDVGRITAG 223

CP001027_0962: domain 1 of 1, from 1462 to 1532: score 37.8, E = 5.3e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++a++ HE+ +P++a+ + a++ l++l+ +++ + ++
CP001027_0 1462 AMGELVASIVHEIGQPIAAVDTSASAGLRWLN-----REPPDLGEA- 1502

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +le i r+a r ++i+ l+ +r a+
CP001027_0 1503 ----------RAMLEHINRSAARAKSIIQALRAKARKAAP 1532

CP001027_0959: domain 1 of 1, from 149 to 207: score 31.7, E = 2.9e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ la+ +H+LRTPLt +++ + +L++
CP001027_0 149 ELLHVLAAYAHDLRTPLTRVMLRSGMLED------------------ 177

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + ++r++ + +Lin L +r++
CP001027_0 178 ----------RTVRDAMERDLAEMGELINASLACARLQCS 207


Histogram of all scores:
score obs exp (one = represents 4 sequences)
----- --- ---
-14 3 0|=
-13 14 0|====
-12 35 22|=====*===
-11 82 114|===================== *
-10 179 212|============================================= *
-9 194 219|================================================= *
-8 166 164|========================================*=
-7 117 103|=========================*====
-6 66 59|==============*==
-5 40 32|=======*==
-4 28 17|====*==
-3 13 9|==*=
-2 8 4|*=
-1 7 2|*=
> 0 15 -|====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 36.9830
P(chi-square) = 2.65e-05

Total sequences searched: 967

Whole sequence top hits:
tophits_s report:
Total hits: 10
Satisfying E cutoff: 10
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 9
Satisfying E cutoff: 9
Total memory: 24K


Acknowledgements:

This research is funded by:

Developed by: