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Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
76 projects found  

4 accessions found for Burkholderia ambifaria MC40-6  

Data for CP001027  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP001027.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001027_0672 CDS_785711-783714 66.7 5.3e-20 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001027_0672 1/1 453 523 .. 1 70 [] 66.7 5.3e-20

Alignments of top-scoring domains:
CP001027_0672: domain 1 of 1, from 453 to 523: score 66.7, E = 5.3e-20
*->ERaRIARELHDsvgQsLsaiklqlelarrllds..dkdpeeareald
E +RIARELHD +gQ+L+a+k+ l++++ l + +++ +re+l
CP001027_0 453 EKTRIARELHDDLGQQLTALKMDLSAVELGL-AgvVAPNTGVREQLG 498

eirelarealaevRrllgdLRpaal<-*
+++l++ + a vRr++ dLRp l
CP001027_0 499 GMHGLIDSTVASVRRIAADLRPVML 523


Histogram of all scores:
score obs exp (one = represents 3 sequences)
----- --- ---
-13 14 0|=====
-12 23 10|===*====
-11 31 88|=========== *
-10 107 205|==================================== *
-9 169 233|========================================================= *
-8 154 179|==================================================== *
-7 126 113|=====================================*====
-6 96 64|=====================*==========
-5 105 34|===========*=======================
-4 42 17|=====*========
-3 36 9|==*=========
-2 19 4|=*=====
-1 19 2|*======
0 5 1|*=
1 7 0|===
2 8 0|===
> 3 6 -|==


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 392.9609
P(chi-square) = 0

Total sequences searched: 967

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: