Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
76 projects found  

4 accessions found for Burkholderia ambifaria MC40-6  

Data for CP001028  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001028.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001028_0139 CDS_149979-152468 64.8 3.4e-19 1
CP001028_0140 CDS_154589-152523 62.4 1.7e-18 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001028_0139 1/1 334 399 .. 1 87 [] 64.8 3.4e-19
CP001028_0140 1/1 304 369 .. 1 87 [] 62.4 1.7e-18

Alignments of top-scoring domains:
CP001028_0139: domain 1 of 1, from 334 to 399: score 64.8, E = 3.4e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k f+a +sHE+RTP+++I+ +elL++ ++l+++
CP001028_0 334 DKAMFVAFISHEIRTPMHTILSSLELLQR---------SKLPPKL-- 369

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++e+ll L++d+L++sr+e+
CP001028_0 370 ----------TSRADAAVAASESLLTLLDDILEYSRLESH 399

CP001028_0140: domain 1 of 1, from 304 to 369: score 62.4, E = 1.7e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k fla +sHE+RTP+ +++ +e L++ + l+ +q
CP001028_0 304 DKAMFLAFVSHEIRTPMQTVLSSLEFLQR---------SRLPVQQ-- 339

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ + ++e ll L++d+Ld+sr+e+
CP001028_0 340 ----------AGRVDAAAAASETLLTLLDDILDYSRLESR 369


Histogram of all scores:
score obs exp (one = represents 1 sequences)
----- --- ---
-14 1 0|=
-13 9 0|=========
-12 21 6|=====*===============
-11 36 32|===============================*====
-10 47 60|=============================================== *
-9 37 62|===================================== *
-8 49 46|=============================================*===
-7 36 29|============================*=======
-6 18 16|===============*==
-5 9 9|========*
-4 8 4|===*====
> -3 3 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 49.9096
P(chi-square) = 1.505e-08

Total sequences searched: 274

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: