Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
39 projects found  

6 accessions found for Nostoc punctiforme PCC 73102  

Data for CP001039  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP001039.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001039_0125 CDS_145573-146718 53.1 1.1e-16 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001039_0125 1/1 191 258 .. 1 70 [] 53.1 1.1e-16

Alignments of top-scoring domains:
CP001039_0125: domain 1 of 1, from 191 to 258: score 53.1, E = 1.1e-16
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+RIARE+HDs+g++L+ + +ql +a++l ++ e+a +a+d++
CP001039_0 191 ERTRIAREIHDSLGHTLTDLDIQLAVAQQLR--FRNLEQAFQAVDTA 235

relarealaevRrllgdLRpaal<-*
+ la +++++v ++l ++R +++
CP001039_0 236 KILAGQCIEDVSQALARMRQSDF 258


Histogram of all scores:
score obs exp (one = represents 1 sequences)
----- --- ---
-14 2 0|==
-13 3 0|===
-12 8 2|=*======
-11 18 18|=================*
-10 45 41|========================================*====
-9 45 47|============================================= *
-8 23 36|======================= *
-7 15 23|=============== *
-6 14 13|============*=
-5 10 6|=====*====
-4 4 3|==*=
-3 3 1|*==
-2 2 0|==
-1 2 0|==
0 0 0|
> 1 3 -|===


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 9.6333
P(chi-square) = 0.141

Total sequences searched: 197

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: