hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001041.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]
Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001041_0037 CDS_49731-45838 75.8 4.5e-23 1
Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001041_0037 1/1 927 993 .. 1 87 [] 75.8 4.5e-23
Alignments of top-scoring domains:
CP001041_0037: domain 1 of 1, from 927 to 993: score 75.8, E = 4.5e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+efla lsHELR PL+ I+g + lL++ ++l+ + +
CP001041_0 927 IKDEFLAVLSHELRSPLNPILGWIRLLQN---------GKLDLPRQ- 963
peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+l+ti+r a+ ++Li+dlLd+sri +g
CP001041_0 964 ----------TEALKTIERNAKLQSQLIEDLLDISRIMQG 993
Histogram of all scores:
score obs exp (one = represents 1 sequences)
----- --- ---
-12 2 1|*=
-11 7 5|====*==
-10 10 10|=========*
-9 5 10|===== *
-8 9 8|=======*=
-7 3 5|=== *
-6 5 2|=*===
-5 2 1|*=
-4 2 0|==
> -3 3 -|===
% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 3.6111
P(chi-square) = 0.3066
Total sequences searched: 48
Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K
Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K
