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Classification of phyla is from NCBI page
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76 projects found  

4 accessions found for Burkholderia phymatum STM815  

Data for CP001044  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001044.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001044_1372 CDS_1584891-1587860 96.9 2.4e-27 1
CP001044_2000 CDS_2304681-2301862 89.4 3.1e-25 1
CP001044_1062 CDS_1201582-1198085 80.6 1e-22 1
CP001044_1121 CDS_1268106-1271633 77.9 5.7e-22 1
CP001044_2053 CDS_2366894-2364285 72.3 2.2e-20 1
CP001044_0817 CDS_937466-938929 71.5 3.6e-20 1
CP001044_2235 CDS_2570359-2571885 69.5 1.4e-19 1
CP001044_1933 CDS_2220418-2222247 67.7 4.3e-19 1
CP001044_0234 CDS_285960-284134 64.4 3.7e-18 1
CP001044_1019 CDS_1159287-1157509 61.4 2.8e-17 1
CP001044_1988 CDS_2287670-2285916 60.2 5.8e-17 1
CP001044_1626 CDS_1853917-1855488 60.2 5.9e-17 1
CP001044_1059 CDS_1196545-1195433 57.0 4.8e-16 1
CP001044_0785 CDS_898140-899663 56.7 5.9e-16 1
CP001044_0818 CDS_940302-938968 56.2 8.2e-16 1
CP001044_0010 CDS_8647-7319 52.3 1e-14 1
CP001044_0918 CDS_1060151-1058820 49.4 6.8e-14 1
CP001044_0811 CDS_932981-931581 48.5 1.2e-13 1
CP001044_1373 CDS_1587863-1589023 38.5 8.2e-11 1
CP001044_0375 CDS_427562-428815 36.0 4.4e-10 1
CP001044_1231 CDS_1413779-1414579 31.3 9.3e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001044_1372 1/1 539 605 .. 1 87 [] 96.9 2.4e-27
CP001044_2000 1/1 478 544 .. 1 87 [] 89.4 3.1e-25
CP001044_1062 1/1 487 555 .. 1 87 [] 80.6 1e-22
CP001044_1121 1/1 528 593 .. 1 87 [] 77.9 5.7e-22
CP001044_2053 1/1 503 569 .. 1 87 [] 72.3 2.2e-20
CP001044_0817 1/1 257 323 .. 1 87 [] 71.5 3.6e-20
CP001044_2235 1/1 274 342 .. 1 87 [] 69.5 1.4e-19
CP001044_1933 1/1 217 283 .. 1 87 [] 67.7 4.3e-19
CP001044_0234 1/1 236 301 .. 1 87 [] 64.4 3.7e-18
CP001044_1019 1/1 214 280 .. 1 87 [] 61.4 2.8e-17
CP001044_1988 1/1 216 282 .. 1 87 [] 60.2 5.8e-17
CP001044_1626 1/1 297 362 .. 1 87 [] 60.2 5.9e-17
CP001044_1059 1/1 146 211 .. 1 87 [] 57.0 4.8e-16
CP001044_0785 1/1 281 345 .. 1 87 [] 56.7 5.9e-16
CP001044_0818 1/1 219 284 .. 1 87 [] 56.2 8.2e-16
CP001044_0010 1/1 223 287 .. 1 87 [] 52.3 1e-14
CP001044_0918 1/1 226 291 .. 1 87 [] 49.4 6.8e-14
CP001044_0811 1/1 240 306 .. 1 87 [] 48.5 1.2e-13
CP001044_1373 1/1 162 230 .. 1 87 [] 38.5 8.2e-11
CP001044_0375 1/1 213 271 .. 1 87 [] 36.0 4.4e-10
CP001044_1231 1/1 36 103 .. 1 87 [] 31.3 9.3e-09

Alignments of top-scoring domains:
CP001044_1372: domain 1 of 1, from 539 to 605: score 96.9, E = 2.4e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++flan+sHELRTPL++I+gya++L++ d+ l++ q
CP001044_1 539 AKDQFLANISHELRTPLNGILGYAQMLQR--------DARLDARQ-- 575

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +i++++++ll Lind+Ld++r++ag
CP001044_1 576 ----------LASVGVIEQSGQHLLTLINDILDFARLGAG 605

CP001044_2000: domain 1 of 1, from 478 to 544: score 89.4, E = 3.1e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHELRTPL++I+gya++L++ d +l+ q
CP001044_2 478 AKSDFLAHMSHELRTPLNGILGYAQILKR--------DKNLDRRQ-- 514

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l +i+r++e+ll Li+d+Ld+++ieag
CP001044_2 515 ----------VDGLMVIQRSGEHLLTLIDDILDMAKIEAG 544

CP001044_1062: domain 1 of 1, from 487 to 555: score 80.6, E = 1e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++ + +a lL+e + ++l++eq
CP001044_1 487 YKSEFLANMSHELRTPLNSSLILARLLQE------NRTGNLTDEQ-- 525

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y eti+ + ll Lind+Ldls+ eag
CP001044_1 526 ----------VRYAETIHASNSDLLVLINDILDLSKVEAG 555

CP001044_1121: domain 1 of 1, from 528 to 593: score 77.9, E = 5.7e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+a++sHE+RTPL+a++g++elL + t+ + q
CP001044_1 528 AQNSFFAAMSHEIRTPLNALLGNLELLSM---------TPGLDAQ-- 563

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l+ + +a+ l++++nd+Ld+s+i+ag
CP001044_1 564 ----------QQRLRAVGAAADGLRHIVNDILDFSKIGAG 593

CP001044_2053: domain 1 of 1, from 503 to 569: score 72.3, E = 2.2e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+efla+l+HELR+PL+ Ir+++ l ++ ++ ++
CP001044_2 503 RKDEFLAMLAHELRNPLAPIRTAIALFEK---------HDGKDQRS- 539

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++e ++r++e++ r+++dlL+ sri +g
CP001044_2 540 ----------ADLIELMRRQTEHMTRIVDDLLEVSRITQG 569

CP001044_0817: domain 1 of 1, from 257 to 323: score 71.5, E = 3.6e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f+a+l+H++RTPL +rg++e++l+ ++s+++
CP001044_0 257 QMSRFTADLAHDMRTPLGNMRGATEVALA---------RPRSADD-- 292

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ +l + l+e erl+r+i+++L l+r+e++
CP001044_0 293 ---------YEALLASNLEECERLSRMIENVLFLARAEHP 323

CP001044_2235: domain 1 of 1, from 274 to 342: score 69.5, E = 1.4e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++an+sH+LRTPLt++ gy+e+L +++ + ls+ +r
CP001044_2 274 ERRELVANISHDLRTPLTSLHGYLETLSMKA-------DSLSDAER- 312

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl ++l ++ rL + l +l+r+e+g
CP001044_2 313 ----------KRYLAIALAQSVKVGRLAQSLFELARLEHG 342

CP001044_1933: domain 1 of 1, from 217 to 283: score 67.7, E = 4.3e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++f+a++sH+LR+PL+aI ++a L + + +++ q+
CP001044_1 217 AKTRFFAAASHDLRQPLHAIGLLAASLND---------SSATPVQH- 253

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + i + +e l++L n++Ldl+r+e+g
CP001044_1 254 ----------AKTASNIANNVEALNQLFNQVLDLARLESG 283

CP001044_0234: domain 1 of 1, from 236 to 301: score 64.4, E = 3.7e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ fl ++sHELRTPL+aI +elL + t se +
CP001044_0 236 AKDAFLGMISHELRTPLHAIVSSIELLGM---------TFHSEAD-- 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l++++ +a++l+++ dl d++r++ag
CP001044_0 272 ----------RKVLHRLETAARHLEAQMKDLTDYARLGAG 301

CP001044_1019: domain 1 of 1, from 214 to 280: score 61.4, E = 2.8e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ef+a+l HELR+P++ I + +L+ ++e+q+
CP001044_1 214 RRDEFIAMLGHELRNPMAPIDSSIAALKL---------LCAGEDQA- 250

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l +++r+ ++l+ L++dlLd +r+++g
CP001044_1 251 ----------TDVLAIAQRQMRQLRTLVDDLLDAARLRHG 280

CP001044_1988: domain 1 of 1, from 216 to 282: score 60.2, E = 5.8e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ef+a+lsHELR+PL I ++++++++ +++++ +
CP001044_1 216 HQVEFIATLSHELRNPLGPIDTALSAAQK---------LAAGSPSV- 252

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l ++ r++++l rL++dlLd sri++g
CP001044_1 253 ----------LSALAVANRQVQQLKRLVSDLLDASRIRHG 282

CP001044_1626: domain 1 of 1, from 297 to 362: score 60.2, E = 5.9e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+a++sHELR PL+aI aelL+ + ++
CP001044_1 297 AMDQFIAAVSHELRSPLNAIVSWAELLQL---------VADPANV-- 332

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ e i+r +++l+r+++dlLd +g
CP001044_1 333 ----------ARAGEAIRRNGRQLSRMVDDLLDSGAVATG 362

CP001044_1059: domain 1 of 1, from 146 to 211: score 57.0, E = 4.8e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++a l H+LRTPL ++++ ae L + ++++eq
CP001044_1 146 ANEMLMAVLGHDLRTPLGTVLASAEYLVR----------NAPDEQS- 181

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+i++++ r++r++ +lL l+r++ g
CP001044_1 182 ----------GAVAGRIRNSSLRMSRMVHQLLNLARLQGG 211

CP001044_0785: domain 1 of 1, from 281 to 345: score 56.7, E = 5.9e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+a++sHELRTPL+++rg +e++++++ +++ ++
CP001044_0 281 SRRNFIADISHELRTPLAVLRGELEAIEDGV--------RKPDRTT- 318

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l +++ e+ l++Li+dl +ls ++ g
CP001044_0 319 -------------LASLQAEVALLSQLIDDLYELSLADIG 345

CP001044_0818: domain 1 of 1, from 219 to 284: score 56.2, E = 8.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+ +++HELR PL+a+++ ++++++ +
CP001044_0 219 SQRTFVGDAAHELRSPLAALKLQLQAAER---------DGSLVGS-- 254

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +e+i+ ++rl +L+ +lL+++r +a+
CP001044_0 255 ----------KQTFERIEGRLNRLIHLVHQLLTMAREDAQ 284

CP001044_0010: domain 1 of 1, from 223 to 287: score 52.3, E = 1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+++++HELRTPLta+++ a+ L+ + ++ q
CP001044_0 223 SERKFISDAAHELRTPLTALQLQADNLQP---------HIAPGNQ-- 258

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e ++ +++ ++r rLi +lL l+r++a
CP001044_0 259 -----------ERFRELQSGIRRSGRLIAQLLRLARADAA 287

CP001044_0918: domain 1 of 1, from 226 to 291: score 49.4, E = 6.8e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a+++HELR PL+a+++ ae L + ++ +
CP001044_0 226 QQRRFIADAAHELRSPLAALSLQAEHLGA---------ADNPHVA-- 261

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re l + + +++r rL+++lL l+r ++g
CP001044_0 262 ----------RERLIRFQAALRRTVRLVEQLLALARSQHG 291

CP001044_0811: domain 1 of 1, from 240 to 306: score 48.5, E = 1.2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+a+++H+LRTPLt + + ++ ++ + e+ +
CP001044_0 240 AQRRFIADAAHQLRTPLTLLDTQLQYARQ---------HRELEPSL- 276

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+l ++r+ +++ L n lL l+++ea
CP001044_0 277 ----------GEALAAMQRSNRSMVGLTNKLLLLAQAEAA 306

CP001044_1373: domain 1 of 1, from 162 to 230: score 38.5, E = 8.2e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +++H+LRTPLt +r +e+Ll +l ++++e++
CP001044_1 162 GVRNVSNAIAHDLRTPLTELRSRLEVLLLGL-------RKKGDEET- 200

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le++ +++r + n lL l+ i+ag
CP001044_1 201 ----------LGQLEVAMADVDRVIGIFNALLRLAEIDAG 230

CP001044_0375: domain 1 of 1, from 213 to 271: score 36.0, E = 4.4e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la+++H+LR P+t ++ a+lL +
CP001044_0 213 ERAVMLAGVAHDLRAPITRMQVRADLLPD------------------ 241

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + lr+ae+l+r++ ++Ld++r a
CP001044_0 242 ----------AANRSGFLRDAESLSRIVTQFLDYARDTAD 271

CP001044_1231: domain 1 of 1, from 36 to 103: score 31.3, E = 9.3e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ l+ +sH+LR PL+aI a +L + ++++
CP001044_1 36 MRDHVLSLVSHDLRSPLNAIHSWAYVLDR---------KIDAKDTTA 73

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++le i++ +++ +L++ + d +r+e+
CP001044_1 74 ----------QRALEGIRNGVDQQVKLLESIVDTTRAETK 103


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-14 4 0|=
-13 22 1|*==
-12 94 53|======*=====
-11 217 278|============================ *
-10 417 516|===================================================== *
-9 457 533|==========================================================*
-8 397 399|=================================================*
-7 289 251|===============================*=====
-6 194 144|=================*=======
-5 90 79|=========*==
-4 66 42|=====*===
-3 34 22|==*==
-2 21 11|=*=
-1 12 6|*=
0 6 3|*
1 0 1|*
2 1 0|=
> 3 28 -|====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 129.2092
P(chi-square) = 2.516e-22

Total sequences searched: 2349

Whole sequence top hits:
tophits_s report:
Total hits: 21
Satisfying E cutoff: 21
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 21
Satisfying E cutoff: 21
Total memory: 29K


Acknowledgements:

This research is funded by:

Developed by: