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Classification of phyla is from NCBI page
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76 projects found  

4 accessions found for Burkholderia phymatum STM815  

Data for CP001045  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001045.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001045_0970 CDS_1147606-1145444 87.1 9.5e-25 1
CP001045_0085 CDS_100866-106898 70.7 4.4e-20 1
CP001045_0928 CDS_1098154-1096700 69.5 9.2e-20 1
CP001045_0420 CDS_506119-507693 68.7 1.6e-19 1
CP001045_0749 CDS_909373-910725 67.4 3.8e-19 1
CP001045_0086 CDS_106908-109052 63.6 4.6e-18 2
CP001045_0811 CDS_974947-979032 55.8 7e-16 1
CP001045_0657 CDS_796824-795445 54.8 1.4e-15 1
CP001045_0133 CDS_171067-168530 50.4 2.5e-14 1
CP001045_0146 CDS_182149-184350 39.4 3.1e-11 1
CP001045_1379 CDS_1642539-1641409 32.1 3.8e-09 1
CP001045_0123 CDS_153762-155633 31.3 6.3e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001045_0970 1/1 264 330 .. 1 87 [] 87.1 9.5e-25
CP001045_0085 1/1 1321 1389 .. 1 87 [] 70.7 4.4e-20
CP001045_0928 1/1 237 303 .. 1 87 [] 69.5 9.2e-20
CP001045_0420 1/1 153 220 .. 1 87 [] 68.7 1.6e-19
CP001045_0749 1/1 230 295 .. 1 87 [] 67.4 3.8e-19
CP001045_0086 2/2 340 407 .. 1 87 [] 62.3 1.1e-17
CP001045_0811 1/1 997 1065 .. 1 87 [] 55.8 7e-16
CP001045_0657 1/1 229 294 .. 1 87 [] 54.8 1.4e-15
CP001045_0133 1/1 476 542 .. 1 87 [] 50.4 2.5e-14
CP001045_0146 1/1 504 574 .. 1 87 [] 39.4 3.1e-11
CP001045_1379 1/1 152 217 .. 1 87 [] 32.1 3.8e-09
CP001045_0123 1/1 394 462 .. 1 87 [] 31.3 6.3e-09

Alignments of top-scoring domains:
CP001045_0970: domain 1 of 1, from 264 to 330: score 87.1, E = 9.5e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+eflanlsHELRTPL++I+gya++L + d+ ls q
CP001045_0 264 AKGEFLANLSHELRTPLNGILGYAQILGR--------DDSLSLRQ-- 300

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ + +i++++e+ll Li++ Ld+++ eag
CP001045_0 301 ----------RDGVAVIQQSGEHLLTLIDETLDFAKVEAG 330

CP001045_0085: domain 1 of 1, from 1321 to 1389: score 70.7, E = 4.4e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++ +++ L ++++ ++ls q+
CP001045_0 1321 YKSEFLANMSHELRTPLNSLLILSDQLCKNSE------GNLSTRQI- 1360

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ +ti+++++ ll Lind+Ldls+ie+g
CP001045_0 1361 -----------EFSRTIHSSGNELLMLINDILDLSKIESG 1389

CP001045_0928: domain 1 of 1, from 237 to 303: score 69.5, E = 9.2e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f a+++HELRTP+t ++g ++++l+ ++ +++
CP001045_0 237 RLESFNADVAHELRTPVTILIGQTQVALT---------RNRAVDDL- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l++ l+e er++ +ind+L l+r+++g
CP001045_0 274 ----------RRTLQSNLEEFERMRGIINDMLFLARADQG 303

CP001045_0420: domain 1 of 1, from 153 to 220: score 68.7, E = 1.6e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+efla+l+HELR+PL+ Ir +ae++++ d+ l++
CP001045_0 153 QKDEFLAMLAHELRNPLAPIRNAAEAIRT-------TDAVLPARV-- 190

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + e+i+r++++l +L++dlLd sri +g
CP001045_0 191 ----------QWAREIIERQSRHLASLLEDLLDVSRITTG 220

CP001045_0749: domain 1 of 1, from 230 to 295: score 67.4, E = 3.8e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++f+a+++HELRTP++aIr+ a+++l+ ++ ++
CP001045_0 230 AERRFTADAAHELRTPIAAIRTQAQVALA---------EADDALR-- 265

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l+ ++ +r rL+n+lL lsr+e+g
CP001045_0 266 ----------QHALRATIEGCDRAARLVNQLLVLSRLESG 295

CP001045_0086: domain 2 of 2, from 340 to 407: score 62.3, E = 1.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+efla+l+HELR+PL+ I +a +++ +e +++ +
CP001045_0 340 RKNEFLAMLAHELRNPLAPIANAAAVMRS--------ASEGDAQVL- 377

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + e++ ++e++ r+++dlLd sri g
CP001045_0 378 ----------RWASEIVGTQVEHMVRIVEDLLDVSRIARG 407

CP001045_0811: domain 1 of 1, from 997 to 1065: score 55.8, E = 7e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++efla +sHEL+ PL+ I++ ael+ + ++ + + +
CP001045_0 997 RRDEFLAVVSHELKHPLNLISASAELIAR---------APETRQSL- 1033

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++ +ti+r + ++i+dlLd+sr ++g
CP001045_0 1034 --------NISRAADTIRRTVIGQAQIIDDLLDISRVRTG 1065

CP001045_0657: domain 1 of 1, from 229 to 294: score 54.8, E = 1.4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f+ +++HEL+TPL+aI+ a+++l+ + +e q
CP001045_0 229 RERAFTGDAAHELKTPLAAIKVQAQVALT---------ARDPERQ-- 264

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ +++ ++++r +L ++lL l+r+e+
CP001045_0 265 ----------RRAMQRVVEAVDRSTHLADQLLALARLEES 294

CP001045_0133: domain 1 of 1, from 476 to 542: score 50.4, E = 2.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+fla l HELR+PL+ +r ++++L+ +s
CP001045_0 476 RMSQFLALLGHELRNPLAPLRNAVSMLQL---------KSASHGA-- 511

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e i+r++ +l rL++dlLd r g
CP001045_0 512 ---------FVPEHELIDRQLSHLTRLVDDLLDAGRVTLG 542

CP001045_0146: domain 1 of 1, from 504 to 574: score 39.4, E = 3.1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++a+++HE +PL+aI ++ +++ ++l+ +++ + ++
CP001045_0 504 MLGELAASIAHEVTQPLAAIVTAGDAANRWLN-----RAKPDLGEV- 544

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ + r+a+r ++ i++++ +++ + +
CP001045_0 545 ----------GQSISQMVRDAKRASDVIRQIRAMAQKRDP 574

CP001045_1379: domain 1 of 1, from 152 to 217: score 32.1, E = 3.8e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l +l H+LR PL aI+ +a+ L +++e
CP001045_1 152 NRNLLLGMLGHDLRSPLQAIQVTASYLAL---------LNAGEHV-- 187

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +++r++ r++ L++dl ++ r g
CP001045_1 188 ----------SKAAGRLIRSGARIQGLLDDLTEFNRTKLG 217

CP001045_0123: domain 1 of 1, from 394 to 462: score 31.3, E = 6.3e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++a+l HEL++PL aIr++++ ++++++ +++++
CP001045_0 394 VLGQMAAGLTHELNQPLVAIRTLCDNARTFFE------RNQPAQA-- 432

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le++ + ++++ L +l ++r +
CP001045_0 433 ----------VANLERVGKLVDSMAVLTGELKAFARKPEV 462


Histogram of all scores:
score obs exp (one = represents 6 sequences)
----- --- ---
-14 4 0|=
-13 16 1|*==
-12 52 37|======*==
-11 158 192|=========================== *
-10 261 357|============================================ *
-9 328 369|======================================================= *
-8 298 276|=============================================*====
-7 205 174|============================*======
-6 125 100|================*====
-5 61 55|=========*=
-4 49 29|====*====
-3 24 15|==*=
-2 9 8|=*
-1 11 4|*=
0 4 2|*
1 4 1|*
> 2 17 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 74.4215
P(chi-square) = 6.165e-12

Total sequences searched: 1626

Whole sequence top hits:
tophits_s report:
Total hits: 12
Satisfying E cutoff: 12
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 12
Satisfying E cutoff: 12
Total memory: 25K


Acknowledgements:

This research is funded by:

Developed by: