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Classification of phyla is from NCBI page
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264 projects found  

2 accessions found for Yersinia pseudotuberculosis PB1/+  

Data for CP001048  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001048.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001048_0941 CDS_1089718-1091034 88.2 1.2e-24 1
CP001048_0325 CDS_375022-372203 86.8 3e-24 1
CP001048_0768 CDS_886346-883572 85.9 5.3e-24 1
CP001048_1321 CDS_1499930-1502803 79.3 3.9e-22 1
CP001048_3638 CDS_4106668-4104332 75.7 4.3e-21 1
CP001048_2016 CDS_2267440-2266055 69.5 2.4e-19 1
CP001048_2944 CDS_3318085-3316649 68.8 3.8e-19 1
CP001048_2786 CDS_3143221-3144765 67.1 1.2e-18 1
CP001048_2881 CDS_3249415-3250800 67.0 1.3e-18 1
CP001048_1938 CDS_2176678-2172650 65.8 2.7e-18 1
CP001048_0070 CDS_75793-74417 63.6 1.1e-17 1
CP001048_0024 CDS_26802-25753 62.4 2.5e-17 1
CP001048_2992 CDS_3364947-3367673 61.1 5.8e-17 1
CP001048_3257 CDS_3643269-3641851 58.1 4.2e-16 1
CP001048_2776 CDS_3130523-3129174 53.5 8.4e-15 1
CP001048_3909 CDS_4398456-4397104 53.2 1e-14 1
CP001048_1260 CDS_1431844-1433658 53.0 1.2e-14 1
CP001048_0485 CDS_548299-547232 46.9 6.3e-13 1
CP001048_3957 CDS_4467399-4469954 40.4 4.2e-11 1
CP001048_2270 CDS_2553031-2554335 36.2 6.4e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001048_0941 1/1 203 269 .. 1 87 [] 88.2 1.2e-24
CP001048_0325 1/1 397 462 .. 1 87 [] 86.8 3e-24
CP001048_0768 1/1 291 356 .. 1 87 [] 85.9 5.3e-24
CP001048_1321 1/1 479 544 .. 1 87 [] 79.3 3.9e-22
CP001048_3638 1/1 282 347 .. 1 87 [] 75.7 4.3e-21
CP001048_2016 1/1 238 304 .. 1 87 [] 69.5 2.4e-19
CP001048_2944 1/1 252 320 .. 1 87 [] 68.8 3.8e-19
CP001048_2786 1/1 280 350 .. 1 87 [] 67.1 1.2e-18
CP001048_2881 1/1 237 301 .. 1 87 [] 67.0 1.3e-18
CP001048_1938 1/1 745 809 .. 1 87 [] 65.8 2.7e-18
CP001048_0070 1/1 238 300 .. 1 87 [] 63.6 1.1e-17
CP001048_0024 1/1 129 194 .. 1 87 [] 62.4 2.5e-17
CP001048_2992 1/1 665 732 .. 1 87 [] 61.1 5.8e-17
CP001048_3257 1/1 255 320 .. 1 87 [] 58.1 4.2e-16
CP001048_2776 1/1 228 291 .. 1 87 [] 53.5 8.4e-15
CP001048_3909 1/1 233 293 .. 1 87 [] 53.2 1e-14
CP001048_1260 1/1 370 436 .. 1 87 [] 53.0 1.2e-14
CP001048_0485 1/1 136 196 .. 1 87 [] 46.9 6.3e-13
CP001048_3957 1/1 497 559 .. 1 87 [] 40.4 4.2e-11
CP001048_2270 1/1 211 271 .. 1 87 [] 36.2 6.4e-10

Alignments of top-scoring domains:
CP001048_0941: domain 1 of 1, from 203 to 269: score 88.2, E = 1.2e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+an+sHELRTPLt+++gy+e++ + +el + r
CP001048_0 203 ARRNFFANVSHELRTPLTVLQGYLEMMHD---------QELAGPLR- 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l t++++++r++ L+ +lL+lsriea
CP001048_0 240 ----------DKALGTMQEQTKRMDGLVKQLLTLSRIEAA 269

CP001048_0325: domain 1 of 1, from 397 to 462: score 86.8, E = 3e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+ l ++sHE+RTPL++ +g++elL++ t+l++ q
CP001048_0 397 RKSDHLTTISHEIRTPLNGALGAVELLQN---------TPLDAGQ-- 432

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ et+++++ +ll++in+lLd+srie+g
CP001048_0 433 ----------MRLAETAHQCSLSLLAIINNLLDFSRIESG 462

CP001048_0768: domain 1 of 1, from 291 to 356: score 85.9, E = 5.3e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g++ l+ t l++ q
CP001048_0 291 IKSEFLANMSHELRTPLNGVIGFTRQTLK---------TSLTPTQ-- 326

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl+ti+r+a+ ll +ind+Ld+s++ea
CP001048_0 327 ----------TDYLQTIQRSANNLLCIINDVLDFSKLEAD 356

CP001048_1321: domain 1 of 1, from 479 to 544: score 79.3, E = 3.9e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks fla++sHELRTPL +I+g+++lL++ el+
CP001048_1 479 SKSMFLATVSHELRTPLYGIIGNLDLLQT---------KELPQGV-- 514

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + +++ ll++i+d+Ld+s+ie++
CP001048_1 515 ----------DRLVTAMNNSSGLLLKIISDILDFSKIESE 544

CP001048_3638: domain 1 of 1, from 282 to 347: score 75.7, E = 4.3e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ f++++sHELRTPL++I g++ +Ll+ tel++eq
CP001048_3 282 DKTTFISTISHELRTPLNGIVGLSRILLD---------TELDAEQ-- 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl+ti+ +a l ++ nd+ ++ ++e
CP001048_3 318 ----------LKYLKTIHVSAITLGNIFNDIIEMDKLERR 347

CP001048_2016: domain 1 of 1, from 238 to 304: score 69.5, E = 2.4e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f a+++HELRTPLt ++g ++l l ++ ++
CP001048_2 238 QLESFNADVAHELRTPLTNLMGQTQLGLS---------RKRETHEL- 274

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++le+ l+e+er+ +++nd+L ls ++ag
CP001048_2 275 ----------EDLLESNLEELERMTSIVNDMLFLSHAQAG 304

CP001048_2944: domain 1 of 1, from 252 to 320: score 68.8, E = 3.8e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ efl+++sHEL+TPL+++r +elL +e+ ++l+ +q
CP001048_2 252 QRHEFLRHISHELKTPLASMREGTELLADEVA------GPLTQDQ-- 290

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e + ++++++++l++Li++lLd+ r a
CP001048_2 291 ----------QEVVAILDHSSRHLQQLIEQLLDYNRKLAD 320

CP001048_2786: domain 1 of 1, from 280 to 350: score 67.1, E = 1.2e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+ +sHEL+TPLt I +yae+L+e l+ ++ ++
CP001048_2 280 QQVSFVGQVSHELKTPLTNITLYAEMLQE-----LQPEQSVPPTAE- 320

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yle+il+e++rl+rLi+++L ++++
CP001048_2 321 ----------QRYLEVILNESQRLSRLIQNILSFTKAPKL 350

CP001048_2881: domain 1 of 1, from 237 to 301: score 67.0, E = 1.3e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a++sHELRTPL+++rg +e+L+++l ++e
CP001048_2 237 MRRDFMADVSHELRTPLAVLRGELEALQDGL-------RQPTPES-- 274

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++++ e+ l +L+ndl +ls+ + g
CP001048_2 275 -------------LSSLQAEVAILTKLVNDLHQLSQSDRG 301

CP001048_1938: domain 1 of 1, from 745 to 809: score 65.8, E = 2.7e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks fla++sHELRTP+ aI+g++el + ++++ e+
CP001048_1 745 TKSTFLATISHELRTPMYAIMGLLELEIR---------SNRPVEK-- 780

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l t+ ++a++l L++d+ d ++ieag
CP001048_1 781 -----------DTLVTVSKSAQSLMLLLDDIIDSAKIEAG 809

CP001048_0070: domain 1 of 1, from 238 to 300: score 63.6, E = 1.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++++++sHELRTPLt +++++ l+++ + ++
CP001048_0 238 AQQRLISDISHELRTPLTRLQLATALMRR---------RHGEGKE-- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+i+ ea+rl+++indlL lsr ++
CP001048_0 274 -------------LERIEMEAQRLDSMINDLLVLSRSQHK 300

CP001048_0024: domain 1 of 1, from 129 to 194: score 62.4, E = 2.5e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++++l+HE+++PL ++rg+a+lL + +l+++ +
CP001048_0 129 AARDLVRGLAHEIKNPLGGLRGAAQLLAK----------ALPDPAL- 164

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
ey+++i+++a+rl++L+++lL r ++
CP001048_0 165 ----------LEYTQVIIEQADRLRNLVDRLLGPQRPGQH 194

CP001048_2992: domain 1 of 1, from 665 to 732: score 61.1, E = 5.8e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la+lsH+LRTPLt++ g ae+L +l ++ ++ +
CP001048_2 665 LRNSLLAALSHDLRTPLTVLFGQAEILTLDL-------AAEGSRH-- 702

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + i++++ + rL+n+lLd++ri++g
CP001048_2 703 ----------APQANQIRQQVLSTTRLVNNLLDMARIQSG 732

CP001048_3257: domain 1 of 1, from 255 to 320: score 58.1, E = 4.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + +l HEL+ PL+aI+g+aelL+e ++ +e
CP001048_3 255 YIEQYVHTLTHELKSPLAAISGAAELLRE---------SPPPETA-- 290

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l i++++ r+++L++ +L +r+e+
CP001048_3 291 ----------QRFLINIEQQSARIQQLVDKMLVQARLESR 320

CP001048_2776: domain 1 of 1, from 228 to 291: score 53.5, E = 8.4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++l ++sHELR PL+ +++++ l +++++ +
CP001048_2 228 AREQLLHDVSHELRSPLARLQLAIGL------------AHQNPGNV- 261

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l++i++e+erl+++i +lL lsr+e+
CP001048_2 262 ----------DNALQRIEHESERLDKMIGELLALSRAENH 291

CP001048_3909: domain 1 of 1, from 233 to 293: score 53.2, E = 1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++a++sH+LRTPLt Ir+++e++ e ++
CP001048_3 233 DRTLLMAGVSHDLRTPLTRIRLATEMMSE--------------DD-- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + e+i +++e ++++i+++ d+ r +++
CP001048_3 264 ----------AYLSESINKDIEECNAIIEQFIDYLRTGQE 293

CP001048_1260: domain 1 of 1, from 370 to 436: score 53.0, E = 1.2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++a+++HE+R+PL++I+g+a+ + +++++e+
CP001048_1 370 AIGNLAAGVAHEIRNPLSSIKGFAKYFEG--------HSPQGSEE-- 406

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ +++++e++rl+r + +lL l r
CP001048_1 407 ----------QELAKVMIKEVDRLNRAVTELLGLVRPSDL 436

CP001048_0485: domain 1 of 1, from 136 to 196: score 46.9, E = 6.3e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f+a+++HELRTPL++Ir+++el+++ + e +
CP001048_0 136 QERLFTADAAHELRTPLAGIRLHLELMEK---------QGIAESK-- 171

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ ++ l + i++lL lsr++++
CP001048_0 172 ---------------SLINRIDLLMHTIEQLLMLSRAGQN 196

CP001048_3957: domain 1 of 1, from 497 to 559: score 40.4, E = 4.2e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +l+H++++ L++I+g +el + + s+ +r
CP001048_3 497 AVGQLTGGLAHDFNNLLAVIIGSLELTAT----------DSSDATR- 532

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++l++aer +L ++lL +sr ++
CP001048_3 533 -------------IHRALKAAERGAQLTQRLLAFSRKQSL 559

CP001048_2270: domain 1 of 1, from 211 to 271: score 36.2, E = 6.4e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k ++ +++HELRTPL +r + + + l+e ++
CP001048_2 211 SKKLLIDGIAHELRTPLVRLRYRLAMSDN-----------LTESEQ- 245

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++++ +l++Li++lL+++r++ +
CP001048_2 246 --------------QALHHDIGQLEALIDELLTYARLDRP 271


Histogram of all scores:
score obs exp (one = represents 14 sequences)
----- --- ---
-15 7 0|=
-14 48 0|====
-13 84 3|*=====
-12 229 94|======*==========
-11 399 491|============================= *
-10 679 912|================================================= *
-9 789 942|========================================================= *
-8 700 705|==================================================*
-7 446 444|===============================*
-6 314 255|==================*====
-5 199 140|=========*=====
-4 112 75|=====*==
-3 46 39|==*=
-2 26 20|=*
-1 29 10|*==
0 6 5|*
1 6 2|*
2 3 1|*
3 0 0|
4 3 0|=
5 1 0|=
6 1 0|=
> 7 23 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 380.3224
P(chi-square) = 0

Total sequences searched: 4150

Whole sequence top hits:
tophits_s report:
Total hits: 20
Satisfying E cutoff: 20
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 20
Satisfying E cutoff: 20
Total memory: 28K


Acknowledgements:

This research is funded by:

Developed by: