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Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
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Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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76 projects found  

3 accessions found for Burkholderia phytofirmans PsJN  

Data for CP001052  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001052.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001052_0605 CDS_687203-691645 92.2 8.2e-26 1
CP001052_2793 CDS_3225127-3223814 91.3 1.5e-25 1
CP001052_0168 CDS_200365-202338 86.2 4.2e-24 1
CP001052_1273 CDS_1468730-1471564 74.9 6.6e-21 1
CP001052_3235 CDS_3713910-3715457 65.7 2.8e-18 1
CP001052_1470 CDS_1694524-1693109 64.3 6.6e-18 1
CP001052_1825 CDS_2099645-2101618 62.8 1.8e-17 1
CP001052_2556 CDS_2955021-2953879 61.8 3.3e-17 1
CP001052_2187 CDS_2526415-2524442 61.6 4e-17 1
CP001052_1244 CDS_1438463-1440109 59.9 1.2e-16 1
CP001052_2136 CDS_2470411-2469047 55.5 2e-15 1
CP001052_3859 CDS_4395326-4396831 53.9 5.9e-15 1
CP001052_3204 CDS_3681762-3680461 52.7 1.3e-14 1
CP001052_1089 CDS_1268016-1269335 47.6 3.5e-13 1
CP001052_2145 CDS_2480414-2481817 47.3 4.3e-13 1
CP001052_1640 CDS_1905532-1911033 42.9 8e-12 1
CP001052_0287 CDS_338785-341187 40.9 2.9e-11 1
CP001052_1833 CDS_2111715-2110366 39.6 6.6e-11 1
CP001052_2371 CDS_2732390-2737903 38.2 1.7e-10 1
CP001052_0491 CDS_570453-572453 36.3 5.8e-10 1
CP001052_2342 CDS_2698965-2701286 35.6 9e-10 1
CP001052_1246 CDS_1443008-1440633 33.3 4.2e-09 1
CP001052_2077 CDS_2404547-2406484 32.2 8.4e-09 1
CP001052_0312 CDS_368130-369440 31.7 1.2e-08 1
CP001052_2534 CDS_2929607-2932123 31.6 1.3e-08 1
CP001052_1250 CDS_1446692-1448029 31.2 1.6e-08 1
CP001052_1823 CDS_2097355-2098974 28.4 1e-07 2
CP001052_1559 CDS_1802178-1803926 28.3 1.1e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001052_0605 1/1 833 898 .. 1 87 [] 92.2 8.2e-26
CP001052_2793 1/1 206 272 .. 1 87 [] 91.3 1.5e-25
CP001052_0168 1/1 277 343 .. 1 87 [] 86.2 4.2e-24
CP001052_1273 1/1 680 745 .. 1 87 [] 74.9 6.6e-21
CP001052_3235 1/1 278 343 .. 1 87 [] 65.7 2.8e-18
CP001052_1470 1/1 247 313 .. 1 87 [] 64.3 6.6e-18
CP001052_1825 1/1 290 356 .. 1 87 [] 62.8 1.8e-17
CP001052_2556 1/1 152 220 .. 1 87 [] 61.8 3.3e-17
CP001052_2187 1/1 286 352 .. 1 87 [] 61.6 4e-17
CP001052_1244 1/1 326 391 .. 1 87 [] 59.9 1.2e-16
CP001052_2136 1/1 219 284 .. 1 87 [] 55.5 2e-15
CP001052_3859 1/1 237 302 .. 1 87 [] 53.9 5.9e-15
CP001052_3204 1/1 213 278 .. 1 87 [] 52.7 1.3e-14
CP001052_1089 1/1 219 277 .. 1 87 [] 47.6 3.5e-13
CP001052_2145 1/1 245 310 .. 1 87 [] 47.3 4.3e-13
CP001052_1640 1/1 1605 1675 .. 1 87 [] 42.9 8e-12
CP001052_0287 1/1 534 606 .. 1 87 [] 40.9 2.9e-11
CP001052_1833 1/1 234 293 .. 1 87 [] 39.6 6.6e-11
CP001052_2371 1/1 1610 1680 .. 1 87 [] 38.2 1.7e-10
CP001052_0491 1/1 419 481 .. 1 81 [. 36.3 5.8e-10
CP001052_2342 1/1 446 510 .. 1 87 [] 35.6 9e-10
CP001052_1246 1/1 527 595 .. 1 87 [] 33.3 4.2e-09
CP001052_2077 1/1 259 325 .. 1 87 [] 32.2 8.4e-09
CP001052_0312 1/1 201 270 .. 1 87 [] 31.7 1.2e-08
CP001052_2534 1/1 588 658 .. 1 87 [] 31.6 1.3e-08
CP001052_1250 1/1 223 291 .. 1 87 [] 31.2 1.6e-08
CP001052_1559 1/1 283 371 .. 1 87 [] 28.3 1.1e-07

Alignments of top-scoring domains:
CP001052_0605: domain 1 of 1, from 833 to 898: score 92.2, E = 8.2e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++f+a++sHE+RTP+++++g++e+L++ t+l+++q
CP001052_0 833 AKDDFFAMMSHEIRTPMNGVLGLVEVLER---------TPLNADQ-- 868

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+l i+++a ll++++dlLd+s+ieag
CP001052_0 869 ----------GEMLGMIHESAGALLQILDDLLDYSKIEAG 898

CP001052_2793: domain 1 of 1, from 206 to 272: score 91.3, E = 1.5e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+an+sHEL+TPLt+++g++e+++e +lse +r
CP001052_2 206 MRRDFVANVSHELKTPLTVLSGFLETMRE---------LPLSEAER- 242

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yle ++++a r+++++ndlL l+++e
CP001052_2 243 ----------SRYLELMEQQASRMRHIVNDLLVLAKLEGD 272

CP001052_0168: domain 1 of 1, from 277 to 343: score 86.2, E = 4.2e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksefl+++sHELRTPL+aI+g+a++L++ d+ ls +q
CP001052_0 277 AKSEFLSSMSHELRTPLNAILGFAQILEM--------DDGLSTDQ-- 313

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + il+++++ll Lin++Ldl+ ie+g
CP001052_0 314 ----------LDSIAEILKAGHHLLGLINEVLDLASIESG 343

CP001052_1273: domain 1 of 1, from 680 to 745: score 74.9, E = 6.6e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l+++sH+LRTPLt+I g++++L + +++ +
CP001052_1 680 LRNSLLSAISHDLRTPLTTIVGFSSMLAQ----------APDAQPN- 715

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e++e i++ea r+ ++ +lLd++r++ag
CP001052_1 716 ----------GELVEAIHEEALRMTGIVTNLLDMARLQAG 745

CP001052_3235: domain 1 of 1, from 278 to 343: score 65.7, E = 2.8e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+a+++H+++TPL+++r+ ael+l+ ++ s+e
CP001052_3 278 LQKRFIADAAHQMKTPLAGLRTQAELALR---------QDVSAEV-- 313

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ le i ++e+ rL+ +lL l+r+e+
CP001052_3 314 ----------HRSLEQIATSSEHAARLVTQLLALARAENR 343

CP001052_1470: domain 1 of 1, from 247 to 313: score 64.3, E = 6.6e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f ++l+H++RTPLt +++ a+++l +++s+++
CP001052_1 247 RLTQFSSDLAHDMRTPLTNLLAEAQVALS---------QPRSADE-- 282

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr +e+ +e +rl rLi+ +L l+r+++
CP001052_1 283 ---------YRSVIESSVDECQRLARLIDSMLFLARADSI 313

CP001052_1825: domain 1 of 1, from 290 to 356: score 62.8, E = 1.8e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++fla+lsHELRTPLt +++ a++L++ + ++q+
CP001052_1 290 AKDRFLAMLSHELRTPLTPVLAGASVLEM---------IPGLPDQA- 326

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++ i+r +e rLi+dlLdl+r +g
CP001052_1 327 ----------RASVRMIRRNVELEARLIDDLLDLTRVANG 356

CP001052_2556: domain 1 of 1, from 152 to 220: score 61.8, E = 3.3e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++nl+HE+++PL +Irg+a+lL+ el+e qr
CP001052_2 152 VNKQLIRNLAHEIKNPLGGIRGAAQLLEF----------ELGERQR- 187

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+eL rey+++i++e++rl+ L+++lL+ r +
CP001052_2 188 DEL-------REYTQVIIKESDRLQTLVDRLLEPHRHPHI 220

CP001052_2187: domain 1 of 1, from 286 to 352: score 61.6, E = 4e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++fla+l+HELR+PL+ +r ++ +++ +t s+
CP001052_2 286 RMRQFLATLAHELRNPLAPVRNAIGVMQL--------ETGVSPTL-- 322

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + i+r++ +l rL++dlLd ri ++
CP001052_2 323 ----------ARSRDLIDRQVTHLTRLVDDLLDVGRIMSN 352

CP001052_1244: domain 1 of 1, from 326 to 391: score 59.9, E = 1.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+ ++sHELR PL+aI+ ++lL++ ++++ ++
CP001052_1 326 AMDHFVTTVSHELRSPLSAIMSWTDLLQR----------AADPSHL- 361

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++i r a++l+++++dlLd i +g
CP001052_1 362 ----------ARATSVISRNARQLSHMVDDLLDSGAIVTG 391

CP001052_2136: domain 1 of 1, from 219 to 284: score 55.5, E = 2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+a+++HELR PL+a+++ ++++ + + +
CP001052_2 219 AQRTFIADAAHELRSPLAALKLQLQAASR---------DGSLKGE-- 254

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ le+++ ++r+ +L+++lL+l+r +a
CP001052_2 255 ----------GQTLERVEGRVNRIIHLVQQLLTLAREDAH 284

CP001052_3859: domain 1 of 1, from 237 to 302: score 53.9, E = 5.9e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+a+++H+LRTPLta++++ae + +++++q+
CP001052_3 237 GQRKFIADAAHQLRTPLTAVKLHAEQAAV----------ARDPQQT- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ++ +a+r rL n+lL l+r+e g
CP001052_3 273 ----------LAAVRELRAAADRAVRLSNQLLSLARAEPG 302

CP001052_3204: domain 1 of 1, from 213 to 278: score 52.7, E = 1.3e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f+a+++HELRTPL+a++ a+l + ++ ++
CP001052_3 213 IQKAFVADAAHELRTPLAAVQIQAQLVAR---------AKDDSGR-- 248

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+l ++ + r rL ++lL l+r e
CP001052_3 249 ----------SEALADLQAGVTRATRLAEQLLALARSEPD 278

CP001052_1089: domain 1 of 1, from 219 to 277: score 47.6, E = 3.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +la+++H+L+TPL+ +r+ ae++ e
CP001052_1 219 DRAVMLAGVAHDLKTPLARLRLRAEMMDE------------------ 247

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + + r+++++ ++++++L ++ +a
CP001052_1 248 ----------VKMRDGVVRDVDSMTHIVEQFLVFAHDGAD 277

CP001052_2145: domain 1 of 1, from 245 to 310: score 47.3, E = 4.3e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f+a+++HEL+TPL+aI+ a+++l+ ++ ++ q
CP001052_2 245 RERAFTADAAHELKTPLAAIKVQAQVALA---------ETETARQ-- 280

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + e++ + ++r rL ++lL l+r++
CP001052_2 281 ----------RLAMERVVQGVDRSARLAEQLLLLARLDVH 310

CP001052_1640: domain 1 of 1, from 1605 to 1675: score 42.9, E = 8e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ a+++HE ++P+ta +ya+++l++l a +++ +e
CP001052_1 1605 TMGQLSASIAHEVKQPITATVAYASAALRWL----AARPPNLDEV-- 1645

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+l++i ++ r ++++++ + + + e +
CP001052_1 1646 ----------REALNRIVADGGRANSIVDRTRAFFKKEPQ 1675

CP001052_0287: domain 1 of 1, from 534 to 606: score 40.9, E = 2.9e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e ++ l+HE+++PLt I++ ae L+++l ++ls+ ++
CP001052_0 534 AWGEVARRLAHEIKNPLTPIQLSAERLQMKLA------DKLSPSDAE 574

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ti +++ + +++++++d++r
CP001052_0 575 VL--------KRGATTIVNQVAAMKQMVDNFRDYARTPPA 606

CP001052_1833: domain 1 of 1, from 234 to 293: score 39.6, E = 6.6e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +la++sH+LRTPL+ +r+ +e+ +
CP001052_1 234 DRALMLAGISHDLRTPLARLRLETEMSPSD----------------- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + +++e+++ +i ++Ld++r +
CP001052_1 264 ----------QATKDAMVDDIEQMDMIIGRFLDYARPVQR 293

CP001052_2371: domain 1 of 1, from 1610 to 1680: score 38.2, E = 1.7e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++a+++HE ++P++a ++a ++l +l ++++++
CP001052_2 1610 TVGQLAASIAHEVKQPIAATVANAGAALLWL-------SARPPDL-- 1647

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e r++le+i +++ r + in+++dl r +
CP001052_2 1648 -------SEARQALERIVNDGSRAGDVINRIRDLIRKAPP 1680

CP001052_0491: domain 1 of 1, from 419 to 481: score 36.3, E = 5.8e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a++ HEL++PL+a+rg+++ + l+ +
CP001052_0 419 ALGQMAAGITHELNQPLAALRGFSDNTRVLLE------RGDQASA-- 457

peLRledpeyreyletilreaerllrLindlLdl<-*
re le i +er+ ++ n+l +
CP001052_0 458 ----------RENLEAIAALTERMGKITNQLKLF 481

CP001052_2342: domain 1 of 1, from 446 to 510: score 35.6, E = 9e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ e l ++sH+LR PL++I gya L+e ++++q
CP001052_2 446 QLIETLGYVSHDLRAPLATITGYARQLRE----------LADSKQ-- 480

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + i+r++++ l Li++l +++ e +
CP001052_2 481 ----------VKPILAIERSVNYQLGLIDELVGYAKTELQ 510

CP001052_1246: domain 1 of 1, from 527 to 595: score 33.3, E = 4.2e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f ++sH+LR PL I g+ +lL+ +++ ls+
CP001052_1 527 ELEGFSYTVSHDLRAPLRHIVGFGDLLRQ------MESERLSARG-- 565

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++e+i+++a+ +L++dlL +s+++
CP001052_1 566 ----------NHFVERIISSARFGGKLVDDLLAFSQMGRA 595

CP001052_2077: domain 1 of 1, from 259 to 325: score 32.2, E = 8.4e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++f++++ H++ +PL+aI +++ +++ ++ +
CP001052_2 259 EKERFFSSAYHDIQQPLAAINLFIRSART---------RIRDGHAV- 295

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l++i++ a +l++ d+ d+s +++
CP001052_2 296 ----------DRDLDVIEETASDILDMFKDIQDYSELGSY 325

CP001052_0312: domain 1 of 1, from 201 to 270: score 31.7, E = 1.2e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ +a+++HE+ TPL++I +++e L++ +++s++ ++
CP001052_0 201 ALGVQAATVAHEIGTPLSTIAMLSEELRD---------AARSDKGLA 238

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
p+ le ++++ + + + +l+ + i ++
CP001052_0 239 PY--------SADLELLEQQMTLCTSALARLRSRASITTN 270

CP001052_2534: domain 1 of 1, from 588 to 658: score 31.6, E = 1.3e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++++l+HEL++PL+aI y++ + l +++ +++ +
CP001052_2 588 TMGEMASSLAHELNQPLAAINNYCSGTVA-----LVKSGRTTPDNL- 628

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+ ++a r +i +++++ + ++
CP001052_2 629 ----------LPVLEKTAQQAVRAGMIIKRIREFVKRSEP 658

CP001052_1250: domain 1 of 1, from 223 to 291: score 31.2, E = 1.6e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + + a+l HE ++P++ ++++e++ e + + +++ +
CP001052_1 223 AIGTLSAGLLHEVNNPVNFCLMAIEIAME-------EPQVKDSASL- 261

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l +++ +r++++++dl +++ g
CP001052_1 262 ----------QECLTDVKQGMHRIQHIVSDLKTFAYRKPG 291

CP001052_1559: domain 1 of 1, from 283 to 371: score 28.3, E = 1.1e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f+ ++sH+LR PL ++g+++ L + s ++++
CP001052_1 283 ENEMFIYSVSHDLRAPLVNLQGFSKELIR------------SCDELR 317

peLR...l...........edpeyreyletilreaerllrLindlLdlsr
+ R+++l +++++ ++ d + e+l+ ++ ++ r +++i+ lL lsr
CP001052_1 318 AAVRessLaaqtrqriervVDEDIGEALHYLQTAVLRASHIIDALLHLSR 367

ieag<-*
+
CP001052_1 368 VGRV 371


Histogram of all scores:
score obs exp (one = represents 13 sequences)
----- --- ---
-14 15 0|==
-13 46 2|*===
-12 140 89|======*====
-11 342 464|=========================== *
-10 655 862|=================================================== *
-9 740 890|========================================================= *
-8 754 666|===================================================*======
-7 492 420|================================*=====
-6 302 241|==================*=====
-5 182 132|==========*===
-4 108 71|=====*===
-3 52 37|==*=
-2 26 19|=*
-1 20 10|*=
0 11 5|*
1 2 2|*
2 1 1|*
3 3 0|=
4 0 0|
> 5 31 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 235.1066
P(chi-square) = 3.263e-313

Total sequences searched: 3922

Whole sequence top hits:
tophits_s report:
Total hits: 28
Satisfying E cutoff: 28
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 27
Satisfying E cutoff: 27
Total memory: 31K


Acknowledgements:

This research is funded by:

Developed by: