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Classification of phyla is from NCBI page
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76 projects found  

3 accessions found for Burkholderia phytofirmans PsJN  

Data for CP001053  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001053.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001053_2190 CDS_2490251-2488086 99.7 5.2e-28 1
CP001053_3018 CDS_3495074-3500014 91.3 1.2e-25 2
CP001053_1374 CDS_1581911-1578324 80.2 1.7e-22 1
CP001053_2859 CDS_3315542-3312033 75.2 4.5e-21 1
CP001053_1833 CDS_2086920-2085463 71.9 3.9e-20 1
CP001053_1207 CDS_1398806-1397346 69.8 1.5e-19 1
CP001053_0391 CDS_448782-450215 68.3 4e-19 1
CP001053_1740 CDS_1981047-1979383 67.9 5e-19 1
CP001053_0839 CDS_967898-969865 67.5 6.8e-19 1
CP001053_1280 CDS_1476258-1478588 66.6 1.2e-18 1
CP001053_0494 CDS_563131-561635 66.6 1.3e-18 1
CP001053_1371 CDS_1576825-1575698 64.4 4.9e-18 1
CP001053_0923 CDS_1064744-1066144 57.5 4.5e-16 1
CP001053_0174 CDS_211944-210607 55.1 2.2e-15 1
CP001053_0888 CDS_1022693-1024516 53.7 5.5e-15 1
CP001053_0048 CDS_51829-53223 51.5 2.4e-14 1
CP001053_0050 CDS_54486-55868 47.9 2.4e-13 1
CP001053_2545 CDS_2930675-2932333 43.8 3.5e-12 1
CP001053_2018 CDS_2298843-2297275 36.7 3.5e-10 1
CP001053_2908 CDS_3374532-3375779 36.7 3.6e-10 1
CP001053_0741 CDS_859762-860916 32.2 6.7e-09 1
CP001053_2749 CDS_3180888-3180067 27.1 1.8e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001053_2190 1/1 262 328 .. 1 87 [] 99.7 5.2e-28
CP001053_1374 1/1 488 556 .. 1 87 [] 80.2 1.7e-22
CP001053_2859 1/1 559 624 .. 1 87 [] 75.2 4.5e-21
CP001053_1833 1/1 234 300 .. 1 87 [] 71.9 3.9e-20
CP001053_1207 1/1 257 323 .. 1 87 [] 69.8 1.5e-19
CP001053_0391 1/1 238 304 .. 1 87 [] 68.3 4e-19
CP001053_1740 1/1 194 258 .. 1 87 [] 67.9 5e-19
CP001053_0839 1/1 217 283 .. 1 87 [] 67.5 6.8e-19
CP001053_1280 1/1 414 480 .. 1 87 [] 66.6 1.2e-18
CP001053_0494 1/1 266 334 .. 1 87 [] 66.6 1.3e-18
CP001053_3018 1/2 366 443 .. 1 87 [] 66.0 1.8e-18
CP001053_1371 1/1 146 211 .. 1 87 [] 64.4 4.9e-18
CP001053_0923 1/1 246 312 .. 1 87 [] 57.5 4.5e-16
CP001053_0174 1/1 218 282 .. 1 87 [] 55.1 2.2e-15
CP001053_0888 1/1 235 300 .. 1 87 [] 53.7 5.5e-15
CP001053_0048 1/1 236 302 .. 1 87 [] 51.5 2.4e-14
CP001053_0050 1/1 237 303 .. 1 87 [] 47.9 2.4e-13
CP001053_2545 1/1 194 259 .. 1 87 [] 43.8 3.5e-12
CP001053_2018 1/1 299 363 .. 1 87 [] 36.7 3.5e-10
CP001053_2908 1/1 213 271 .. 1 87 [] 36.7 3.6e-10
CP001053_0741 1/1 137 200 .. 1 78 [. 32.2 6.7e-09
CP001053_2749 1/1 35 102 .. 1 87 [] 27.1 1.8e-07

Alignments of top-scoring domains:
CP001053_2190: domain 1 of 1, from 262 to 328: score 99.7, E = 5.2e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+eflan+sHELRTPL++I+gya++L++ d++lse q
CP001053_2 262 AKGEFLANMSHELRTPLNGILGYAQILER--------DAALSERQ-- 298

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re ++i++++e+ll Li+d Ld++rieag
CP001053_2 299 ----------RERASSIRHSGEHLLTLIEDTLDFARIEAG 328

CP001053_1374: domain 1 of 1, from 488 to 556: score 80.2, E = 1.7e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++ + +a+lL+ + ++l+eeq
CP001053_1 488 YKSEFLANMSHELRTPLNSSLILAKLLQQ------NRTGNLTEEQ-- 526

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y eti+ + ll Lind+Ldls+ eag
CP001053_1 527 ----------VRYAETIHASNSDLLVLINDILDLSKVEAG 556

CP001053_2859: domain 1 of 1, from 559 to 624: score 75.2, E = 4.5e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+a++sHE+RTPL+a++g++el + t+ e +
CP001053_2 559 ARTNFFAAMSHEIRTPLNALLGNLELFAR---------TPGLEAH-- 594

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l t++ +a+ l+r +nd+Ld+s+i+ag
CP001053_2 595 ----------SQRLATLDLAADALRRVVNDILDFSKIDAG 624

CP001053_1833: domain 1 of 1, from 234 to 300: score 71.9, E = 3.9e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f a+++HELRTP+t ++g +e++l+ ++s +++
CP001053_1 234 RLESFNADVAHELRTPVTILIGQTEVALT---------RNRSVDDL- 270

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l++ l+e er++++ind+L l+r+++g
CP001053_1 271 ----------RHTLQSNLEEYERMRAIINDMLFLARADQG 300

CP001053_1207: domain 1 of 1, from 257 to 323: score 69.8, E = 1.5e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s+f+a+l+H++RTPL+ +rg+ae++l+ ++s ++
CP001053_1 257 HLSRFTADLAHDMRTPLSNMRGAAEVALA---------RPRSVDE-- 292

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ +l + l+e +rl+r+i+ +L l+r+e++
CP001053_1 293 ---------YEALLASNLEECDRLSRMIESVLFLARAEHP 323

CP001053_0391: domain 1 of 1, from 238 to 304: score 68.3, E = 4e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f +nl+H++RTPLt ++++a+++l + +s+e+
CP001053_0 238 RLSQFSSNLAHDMRTPLTNLLAAAQVALS---------QRRSAED-- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr+ +e+ +e +rl+++i+d+L l+r ++
CP001053_0 274 ---------YRDVIESSVDEYRRLSHMIEDMLFLARSDQA 304

CP001053_1740: domain 1 of 1, from 194 to 258: score 67.9, E = 5e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+efla+l+HELR+PL+aI++ ++l++ + e+ e++
CP001053_1 194 RKNEFLAMLAHELRNPLAAISLSLQLAQQSG-------KEAHEKT-- 231

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+i r++ +l+r++ndlLd sri g
CP001053_1 232 -------------YAVIGRQTAQLSRMVNDLLDVSRITRG 258

CP001053_0839: domain 1 of 1, from 217 to 283: score 67.5, E = 6.8e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++f+a++sH+LR+PL+aI ++a L + t++++ q+
CP001053_0 217 AKTRFFAAASHDLRQPLHAIGLLAASLND---------TAATPVQH- 253

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ e i +e l++L n++Ldl+r+e+g
CP001053_0 254 ----------AKTAEHIVYNVEALNQLFNQVLDLARLESG 283

CP001053_1280: domain 1 of 1, from 414 to 480: score 66.6, E = 1.2e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+efla+l+HELR+PL+ +r +e+L+ e ++q+
CP001053_1 414 RKDEFLATLAHELRNPLAPMRNVLEILRL---------KEFADPQL- 450

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +r+++++ +L++dlL+ sri +g
CP001053_1 451 ----------SWSRDVFDRQLQHMTHLVDDLLEVSRITQG 480

CP001053_0494: domain 1 of 1, from 266 to 334: score 66.6, E = 1.3e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++an+sH+LRTPLt++ gy+e+L ++ ++l+e +r
CP001053_0 266 QRRELIANISHDLRTPLTSLHGYLETLSLKS-------DTLGETER- 304

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl ++l ++ rL + l +l+r+e+g
CP001053_0 305 ----------KRYLAIALAQSVKVGRLAQALFELARLEHG 334

CP001053_3018: domain 1 of 2, from 366 to 443: score 66.0, E = 1.8e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldk.......v.lagdt
ak+ f++n+sHE+RTPLt ++g +e Ll+ ++++++++ +++ ++
CP001053_3 366 AKTTFFSNISHEFRTPLTLMLGPLEELLA---RpqpgpsgNnAQTRS 409

elseeqrlpeLRledpeyreyletilreaerllrLindlLdlsrieag<-
+ ++ r ++e+ +r + rll+L+n lLd+srieag
CP001053_3 410 DIDD--------------RALIEITHRNGLRLLKLVNALLDFSRIEAG 443

*

CP001053_3 - -

CP001053_1371: domain 1 of 1, from 146 to 211: score 64.4, E = 4.9e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++a lsH+LRTPL a+++ ae L + t+++e+
CP001053_1 146 ANEMLMAVLSHDLRTPLGAVLASAEYLMR---------TAADEQS-- 181

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++++++ r+ r++++lL l+r++ g
CP001053_1 182 ----------ATVAARVKNSSLRMARMVDQLLNLARLQGG 211

CP001053_0923: domain 1 of 1, from 246 to 312: score 57.5, E = 4.5e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f a+l+HE+RTP+ a++g +++ l+ + +++
CP001053_0 246 RLSQFSADLAHEIRTPVGALIGQTQVTLA---------RIREPDE-- 281

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y++ le+ l+e+ rl+++ +++L l+ +++
CP001053_0 282 ---------YQQVLESNLEELSRLSHIAENILFLAHADHA 312

CP001053_0174: domain 1 of 1, from 218 to 282: score 55.1, E = 2.2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+++++HELRTPLta+++ a+ L++ + +++ q
CP001053_0 218 SERKFISDAAHELRTPLTALQLQADNLQR---------DVMPSNQ-- 253

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e ++ ++ + r ++Li++lL l+r++a+
CP001053_0 254 -----------ERFRALQGGIARSSNLISQLLRLARADAP 282

CP001053_0888: domain 1 of 1, from 235 to 300: score 53.7, E = 5.5e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ fl ++sHELRTPL+aI +elL ++ se +
CP001053_0 235 AKDAFLGMISHELRTPLHAIVSSIELLGFNY---------HSEAD-- 270

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ +++++ ++++l+++ dl d++r++ag
CP001053_0 271 ----------RKVIQRLETAGRHLEAQMKDLTDYARLGAG 300

CP001053_0048: domain 1 of 1, from 236 to 302: score 51.5, E = 2.4e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+a+++H+LRTPLt + + ++ ++ ++ + +
CP001053_0 236 AQRRFIADAAHQLRTPLTLLGTQLQFARQ---------QDGLNPAL- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+l ++r+ +++ L n lL l+++ea
CP001053_0 273 ----------DEALAAMHRSNRSMVGLTNKLLLLAQAEAA 302

CP001053_0050: domain 1 of 1, from 237 to 303: score 47.9, E = 2.4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+++++H++RTPLt + + ++ ++ +++++++
CP001053_0 237 TQRQFISDAAHQMRTPLTLLVAQIQFARQ--------RENRDAPL-- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l ++++++ l L + lL l+++e+
CP001053_0 274 ----------AEALAGMHKSSRKLTTLTDKLLLLAQAESA 303

CP001053_2545: domain 1 of 1, from 194 to 259: score 43.8, E = 3.5e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++ +++H++++ L++I+ +ael+ + s+e +
CP001053_2 194 ALGQLTGGIAHDFNNLLNVIMVNAELIAR----------VSSDERL- 229

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + t++r+++r +L +lL++sr +
CP001053_2 230 ----------RGMAATVKRATQRGAKLTGQLLTFSRNSNL 259

CP001053_2018: domain 1 of 1, from 299 to 363: score 36.7, E = 3.5e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a ++HE+R+PL a+r+ +e l+ +d++++ +
CP001053_2 299 SLGKLAAQVAHEIRNPLGAVRLKLENVLA-------HDGHAPNQS-- 336

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l ++l ++er++ ++ lL l++ +
CP001053_2 337 -------------LTSALGQVERIETQVTSLLALTQPVTL 363

CP001053_2908: domain 1 of 1, from 213 to 271: score 36.7, E = 3.6e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la+++H+LR P+t ++ a+lL +
CP001053_2 213 ERAVMLAGVAHDLRAPITRMQVRADLLPD------------------ 241

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + lr+ae+l+r++ ++Ld++r a
CP001053_2 242 ----------EANRRGFLRDAESLSRIVTQFLDFARETAD 271

CP001053_0741: domain 1 of 1, from 137 to 200: score 32.2, E = 6.7e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e la l+HEL+TPL++I+++a ++++ + ++e +
CP001053_0 137 AMDETLAFLAHELNTPLATISLFARSVENDVA------EQYDPERQ- 176

peLRledpeyreyletilreaerllrLindl<-*
+e+ + +++l+ a+++l Li+ +
CP001053_0 177 -------REIGLAAKSMLNNAQYCLTLISSF 200

CP001053_2749: domain 1 of 1, from 35 to 102: score 27.1, E = 1.8e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ l+ +sH+LR PL+aI a +L+++l ++ ++
CP001053_2 35 MRDHVLSLVSHDLRGPLNAIHSWAYVLERKL-------DASDPNS-- 72

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ i++ +++ +L++ + d +r+e+
CP001053_2 73 ----------QRAVIGIRNGVDQQVKLLETIVDATRAETK 102


Histogram of all scores:
score obs exp (one = represents 11 sequences)
----- --- ---
-15 2 0|=
-14 6 0|=
-13 35 2|*===
-12 132 72|======*=====
-11 253 373|======================= *
-10 532 693|================================================= *
-9 622 715|========================================================= *
-8 555 535|================================================*==
-7 405 337|==============================*======
-6 248 194|=================*=====
-5 154 106|=========*====
-4 77 57|=====*=
-3 43 30|==*=
-2 25 15|=*=
-1 9 8|*
0 11 4|*
1 5 2|*
2 2 1|*
> 3 36 -|====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 206.3640
P(chi-square) = 3.549e-38

Total sequences searched: 3152

Whole sequence top hits:
tophits_s report:
Total hits: 22
Satisfying E cutoff: 22
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 22
Satisfying E cutoff: 22
Total memory: 29K


Acknowledgements:

This research is funded by:

Developed by: