Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
76 projects found  

3 accessions found for Burkholderia phytofirmans PsJN  

Data for CP001054  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001054.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001054_0029 CDS_25549-27171 35.9 3.2e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001054_0029 1/1 384 454 .. 1 87 [] 35.9 3.2e-11

Alignments of top-scoring domains:
CP001054_0029: domain 1 of 1, from 384 to 454: score 35.9, E = 3.2e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e+ a+++HE +PL+aI + e++l++l ++++ + e++
CP001054_0 384 ALGELSASIAHEVGQPLAAIVTSGEACLRWL-----HRQPPNMEEI- 424

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ + ++++r +++++++ l + +
CP001054_0 425 ----------EGCVSHMTDQGNRAAAIVQRVRALMKGAPP 454


Histogram of all scores:
score obs exp (one = represents 1 sequences)
----- --- ---
-14 2 0|==
-13 5 0|=====
-12 15 3|==*============
-11 34 19|==================*===============
-10 33 36|================================= *
-9 25 37|========================= *
-8 18 28|================== *
-7 15 17|=============== *
-6 9 10|=========*
-5 6 5|====*=
-4 2 3|==*
-3 0 1|*
-2 1 0|=
> -1 2 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 19.4322
P(chi-square) = 0.003493

Total sequences searched: 167

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: