Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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25 projects found  

1 accessions found for Elusimicrobium minutum Pei191  

Data for CP001055  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001055.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001055_1319 CDS_1438619-1440307 65.4 1.3e-18 1
CP001055_1181 CDS_1296254-1294440 58.6 1.1e-16 1
CP001055_0498 CDS_560927-559965 57.2 2.7e-16 1
CP001055_1180 CDS_1294440-1293313 40.9 1.1e-11 1
CP001055_0170 CDS_188098-187352 38.8 4.5e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001055_1319 1/1 343 409 .. 1 87 [] 65.4 1.3e-18
CP001055_1181 1/1 392 459 .. 1 87 [] 58.6 1.1e-16
CP001055_0498 1/1 88 156 .. 1 87 [] 57.2 2.7e-16
CP001055_1180 1/1 150 216 .. 1 87 [] 40.9 1.1e-11
CP001055_0170 1/1 7 76 .. 1 87 [] 38.8 4.5e-11

Alignments of top-scoring domains:
CP001055_1319: domain 1 of 1, from 343 to 409: score 65.4, E = 1.3e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ + +++H+LR P+ +++gy+elL+ ++ see++
CP001055_1 343 MKEFVFKAVAHDLRAPVFGLQGYVELLQS---------GKISEEEA- 379

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y+ ++++++e l++L++++Ld s++eag
CP001055_1 380 ----------KNYIGIMKESLENLSSLLENILDVSKLEAG 409

CP001055_1181: domain 1 of 1, from 392 to 459: score 58.6, E = 1.1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e+++ +sHE+R+PL++I+ ++l+++ + +e +++
CP001055_1 392 AIGEMASIISHEIRNPLAVISNSTHLIRA-------IVGEENPKL-- 429

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +++i++e+++ +r+++++L ++r + +
CP001055_1 430 ----------KRQFDIIDSEVRQANRIVEEVLGYARDRKQ 459

CP001055_0498: domain 1 of 1, from 88 to 156: score 57.2, E = 2.7e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+f++ ++H+L++PL++I+g++++L ++ + + +
CP001055_0 88 IKSKFMSIVAHDLKQPLSSIQGLTSVLMLDG------VAGGGVGD-- 126

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+ il++++ ++ L +dl+d+s ieag
CP001055_0 127 ----------QQALNNILKATDNMNMLMSDLMDISMIEAG 156

CP001055_1180: domain 1 of 1, from 150 to 216: score 40.9, E = 1.1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+f++ +sH+L + L ++++ ++L+++l l+e+q
CP001055_1 150 IKSKFFSIVSHDLSNSLMTLKMSFDMLKKKL--------VLDEDQ-- 186

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++++++++++Li+dl d + ie g
CP001055_1 187 ----------EKKAGYMRESIDQIEHLIRDLVDWAAIEKG 216

CP001055_0170: domain 1 of 1, from 7 to 76: score 38.8, E = 4.5e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
s+ la +sH LRTPL+ I gy+e++ + + + ++ s+ +
CP001055_0 7 IASRVLALVSHKLRTPLSIINGYSEAIIA-----QKSKEKFSPFT-- 46

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++e i ++++ l L++ lL +++ie+
CP001055_0 47 ----------EKAFEEINKQGQKLAILVDKLLRFTKIEEM 76


Histogram of all scores:
score obs exp (one = represents 6 sequences)
----- --- ---
-15 1 0|=
-14 6 0|=
-13 23 1|*===
-12 113 34|=====*=============
-11 184 181|==============================*
-10 309 336|==================================================== *
-9 298 347|================================================== *
-8 239 259|======================================== *
-7 144 163|======================== *
-6 90 94|===============*
-5 59 51|========*=
-4 29 27|====*
-3 14 14|==*
-2 8 7|=*
-1 3 4|*
0 0 2|*
1 2 1|*
> 2 7 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 188.9745
P(chi-square) = 3.196e-35

Total sequences searched: 1529

Whole sequence top hits:
tophits_s report:
Total hits: 5
Satisfying E cutoff: 5
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 5
Satisfying E cutoff: 5
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: