hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001070.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]
Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001070_0036 CDS_33605-31998 44.9 4.9e-14 1
Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001070_0036 1/1 309 377 .. 1 87 [] 44.9 4.9e-14
Alignments of top-scoring domains:
CP001070_0036: domain 1 of 1, from 309 to 377: score 44.9, E = 4.9e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f++++sHE+RTPL +I g a+ L + +++l++e++
CP001070_0 309 LQRNFVSMASHEFRTPLGVIDGQAQRLMR-------MRDALPPETL- 347
peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e +i+ +++r+ +L + lLd s
CP001070_0 348 ----------EERCGKIRAAVQRMTHLMDHLLDSSHWLDS 377
Histogram of all scores:
score obs exp (one = represents 1 sequences)
----- --- ---
-13 4 0|====
-12 7 2|=*=====
-11 12 10|=========*==
-10 16 19|================ *
-9 19 20|===================*
-8 12 15|============ *
-7 7 9|======= *
-6 6 5|====*=
-5 2 3|==*
-4 2 1|*=
-3 1 0|=
-2 0 0|
> -1 2 -|==
% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 2.4680
P(chi-square) = 0.7813
Total sequences searched: 90
Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K
Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K
