Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
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Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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25 projects found  

1 accessions found for Akkermansia muciniphila ATCC BAA-835  

Data for CP001071  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001071.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001071_1088 CDS_1325530-1324301 78.6 3.3e-22 1
CP001071_1698 CDS_2110229-2108592 74.2 5.9e-21 1
CP001071_0813 CDS_975477-978155 52.2 1e-14 1
CP001071_0306 CDS_366881-368032 47.2 2.6e-13 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001071_1088 1/1 174 243 .. 1 87 [] 78.6 3.3e-22
CP001071_1698 1/1 319 385 .. 1 87 [] 74.2 5.9e-21
CP001071_0813 1/1 668 734 .. 1 87 [] 52.2 1e-14
CP001071_0306 1/1 151 222 .. 1 87 [] 47.2 2.6e-13

Alignments of top-scoring domains:
CP001071_1088: domain 1 of 1, from 174 to 243: score 78.6, E = 3.3e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+an+sHELRTPLt I gy+e L e + e+ +
CP001071_1 174 MRRDFVANASHELRTPLTIIVGYLENLME----------DDLVEESP 210

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + r+++ ++++ ++rl ++i+d+L +s++e+g
CP001071_1 211 GLA-------RKFIGVMHQNSQRLMNIIEDMLMISKLESG 243

CP001071_1698: domain 1 of 1, from 319 to 385: score 74.2, E = 5.9e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f++++ HELRTPLt+ ++y+e+L++ + +e+++
CP001071_1 319 RRGDFVSAVTHELRTPLTSFSLYTEMLED---------GMVPEQKK- 355

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
ey ++re +rl++Li+++L +sr++ +
CP001071_1 356 ----------PEYYANMQRECRRLEHLIENVLSYSRLQRN 385

CP001071_0813: domain 1 of 1, from 668 to 734: score 52.2, E = 1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +l ++sHE++TPL++I g +e L +++ +e+
CP001071_0 668 LHRSLLDSVSHEFKTPLAVIEGGCEKLAG--------RAASAPEE-- 704

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re il +a+rl+rL+ +lLd sr+e+g
CP001071_0 705 ----------REEYGEILLAARRLRRLVKNLLDVSRLESG 734

CP001071_0306: domain 1 of 1, from 151 to 222: score 47.2, E = 2.6e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ ++a+++HE+ +PL++I ++++lL +++ l+++ r
CP001071_0 151 ALTLLAAGVAHEIGNPLNSIGLHLQLLARKA-------KQLPPKYRT 190

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +e+l+t+++e+ rl+ ++ ++L+ r +
CP001071_0 191 DM--------EELLKTAESETTRLDVILKQFLQAIRPTRP 222


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-14 5 0|=
-13 21 1|*==
-12 87 48|=====*=====
-11 210 253|=========================== *
-10 366 470|============================================== *
-9 419 485|===================================================== *
-8 368 363|=============================================*
-7 289 229|============================*========
-6 165 131|================*====
-5 91 72|========*===
-4 46 38|====*=
-3 30 20|==*=
-2 19 10|=*=
-1 8 5|*
0 3 2|*
1 3 1|*
> 2 8 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 111.5145
P(chi-square) = 9.126e-19

Total sequences searched: 2138

Whole sequence top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: