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Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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132 projects found  

4 accessions found for Rhizobium etli CIAT 652  

Data for CP001074  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001074.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001074_1373 CDS_1375820-1373535 97.1 3.9e-27 1
CP001074_3326 CDS_3388102-3384722 96.1 7.5e-27 1
CP001074_2502 CDS_2549115-2550650 93.6 3.7e-26 1
CP001074_0424 CDS_446113-443834 87.5 2e-24 1
CP001074_1329 CDS_1333364-1334905 85.8 6e-24 1
CP001074_0571 CDS_578046-579155 80.5 1.9e-22 1
CP001074_3519 CDS_3584899-3588282 77.8 1.1e-21 1
CP001074_0036 CDS_38883-37105 72.0 5e-20 1
CP001074_0031 CDS_33941-31356 71.7 6e-20 1
CP001074_0790 CDS_805683-801910 70.8 1.1e-19 1
CP001074_1764 CDS_1780470-1778887 59.6 1.6e-16 1
CP001074_0688 CDS_699447-697249 54.8 3.7e-15 1
CP001074_3097 CDS_3149312-3151171 50.5 6.1e-14 1
CP001074_2008 CDS_2020305-2021459 50.1 7.9e-14 1
CP001074_2026 CDS_2043341-2045611 48.7 2e-13 1
CP001074_2764 CDS_2801988-2800249 48.6 2.2e-13 1
CP001074_0627 CDS_638019-634516 44.5 3.1e-12 1
CP001074_0059 CDS_58672-57362 43.1 7.4e-12 1
CP001074_0686 CDS_696832-695237 42.8 9.3e-12 1
CP001074_1371 CDS_1369035-1370447 40.5 4.2e-11 1
CP001074_3804 CDS_3895002-3896384 39.0 1.1e-10 1
CP001074_2464 CDS_2518248-2516173 37.3 3.3e-10 1
CP001074_0692 CDS_702329-701613 34.4 2.2e-09 1
CP001074_2471 CDS_2525217-2523895 33.4 4.2e-09 1
CP001074_0123 CDS_143758-145002 33.1 5.4e-09 1
CP001074_1587 CDS_1597199-1598845 33.0 5.4e-09 1
CP001074_3124 CDS_3177988-3176612 31.0 2e-08 1
CP001074_2651 CDS_2693465-2692185 30.9 2.2e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001074_1373 1/1 535 604 .. 1 87 [] 97.1 3.9e-27
CP001074_3326 1/1 591 656 .. 1 87 [] 96.1 7.5e-27
CP001074_2502 1/1 261 330 .. 1 87 [] 93.6 3.7e-26
CP001074_0424 1/1 242 307 .. 1 87 [] 87.5 2e-24
CP001074_1329 1/1 241 310 .. 1 87 [] 85.8 6e-24
CP001074_0571 1/1 147 214 .. 1 87 [] 80.5 1.9e-22
CP001074_3519 1/1 676 742 .. 1 87 [] 77.8 1.1e-21
CP001074_0036 1/1 354 419 .. 1 87 [] 72.0 5e-20
CP001074_0031 1/1 629 697 .. 1 87 [] 71.7 6e-20
CP001074_0790 1/1 1024 1093 .. 1 87 [] 70.8 1.1e-19
CP001074_1764 1/1 289 357 .. 1 87 [] 59.6 1.6e-16
CP001074_0688 1/1 496 564 .. 1 87 [] 54.8 3.7e-15
CP001074_3097 1/1 402 470 .. 1 87 [] 50.5 6.1e-14
CP001074_2008 1/1 141 205 .. 1 87 [] 50.1 7.9e-14
CP001074_2026 1/1 507 579 .. 1 87 [] 48.7 2e-13
CP001074_2764 1/1 348 416 .. 1 87 [] 48.6 2.2e-13
CP001074_0627 1/1 801 866 .. 1 87 [] 44.5 3.1e-12
CP001074_0059 1/1 212 278 .. 1 87 [] 43.1 7.4e-12
CP001074_0686 1/1 139 205 .. 1 87 [] 42.8 9.3e-12
CP001074_1371 1/1 241 306 .. 1 87 [] 40.5 4.2e-11
CP001074_3804 1/1 238 303 .. 1 87 [] 39.0 1.1e-10
CP001074_2464 1/1 322 388 .. 1 87 [] 37.3 3.3e-10
CP001074_0692 1/1 20 83 .. 1 82 [. 34.4 2.2e-09
CP001074_2471 1/1 235 293 .. 1 87 [] 33.4 4.2e-09
CP001074_0123 1/1 178 249 .. 1 87 [] 33.1 5.4e-09
CP001074_1587 1/1 167 235 .. 1 87 [] 33.0 5.4e-09
CP001074_3124 1/1 255 313 .. 1 87 [] 31.0 2e-08
CP001074_2651 1/1 244 302 .. 1 87 [] 30.9 2.2e-08

Alignments of top-scoring domains:
CP001074_1373: domain 1 of 1, from 535 to 604: score 97.1, E = 3.9e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHELRTPL+aI+g++e+L+++++ ++l++ +
CP001074_1 535 AKSEFLANMSHELRTPLNAILGFSEILQNQMF------GPLGSAK-- 573

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y ey + i++++++ll+ i+d+Ld+s+ieag
CP001074_1 574 ---------YDEYARDIHDSGKHLLNVISDILDMSKIEAG 604

CP001074_3326: domain 1 of 1, from 591 to 656: score 96.1, E = 7.5e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHE+RTP+++++g+aelL + t+l+ q
CP001074_3 591 AKSEFLANMSHEIRTPMNGVLGMAELLAK---------TNLDTRQ-- 626

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++++i ++++ ll +ind+Ld+s+i+ag
CP001074_3 627 ----------KTFIDIIVKSGNALLTIINDILDFSKIDAG 656

CP001074_2502: domain 1 of 1, from 261 to 330: score 93.6, E = 3.7e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHELRTPL+aI+g++e++ +e+ ++l ++
CP001074_2 261 AKSRFLASMSHELRTPLNAILGFSEVMSAEVM------GPLANPT-- 299

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ey i+r++++ll+Lin++Ldlsrieag
CP001074_2 300 ---------YKEYAGDIHRSGQHLLDLINEILDLSRIEAG 330

CP001074_0424: domain 1 of 1, from 242 to 307: score 87.5, E = 2e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks++la++sHE RTPL++I+g+++lL e t l+ eq
CP001074_0 242 AKSRLLATVSHEVRTPLSGILGMTHLLAE---------TRLTQEQ-- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ yl i+++++ l +L++dlLd+s ie g
CP001074_0 278 ----------QNYLANIRQSGHALTQLVEDLLDFSTIEVG 307

CP001074_1329: domain 1 of 1, from 241 to 310: score 85.8, E = 6e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHELRTPL+aI+g++++L e++ ++ + +
CP001074_1 241 AKSRFLAAVSHELRTPLNAILGFSDILIGEYF------GKFENDRQ- 280

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey+ +++++ +ll+ +n +Ld+s+ieag
CP001074_1 281 ----------REYVGLVRESGAHLLSVVNTMLDMSKIEAG 310

CP001074_0571: domain 1 of 1, from 147 to 214: score 80.5, E = 1.9e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f+an+sHELRTPL+++rg++e+++ +++++++++
CP001074_0 147 MRSDFVANASHELRTPLASLRGFIETIQG---------PAKNDQKAQ 184

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l ++ +++ r++rL++dlL lsr+e
CP001074_0 185 ----------AQFLGIMFDQTTRMSRLVDDLLSLSRLELK 214

CP001074_3519: domain 1 of 1, from 676 to 742: score 77.8, E = 1.1e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+ + +lsHELRTPL+a++gya++L++ d++ +++
CP001074_3 676 AKSRYVVGLSHELRTPLNAVLGYAQILER--------DDTIPAPR-- 712

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++i+r+ae+l+ Li+ lLd+s+ieag
CP001074_3 713 ----------QSSIKVIRRSAEHLSGLIDGLLDISKIEAG 742

CP001074_0036: domain 1 of 1, from 354 to 419: score 72.0, E = 5e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + f+a++sHEL++PLt++r ++e+L ++se+ +
CP001074_0 354 AIESFAADVSHELKNPLTSLRSAVETLPL----------AKSEDSK- 389

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l++i+++++rl+rLi+d+ d sr++a+
CP001074_0 390 ----------KRLLDVIQHDVRRLDRLISDISDASRLDAE 419

CP001074_0031: domain 1 of 1, from 629 to 697: score 71.7, E = 6e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+ ++s ELR PLt I+g+++lL++ +g ++l+e q
CP001074_0 629 LKNDFVQHVSYELRSPLTNIIGFTDLLRT------QGVGPLNERQ-- 667

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ey++ i ++ ll L+nd+Ldl+ +ag
CP001074_0 668 ----------AEYIDHISTSSSVLLTLVNDILDLATVDAG 697

CP001074_0790: domain 1 of 1, from 1024 to 1093: score 70.8, E = 1.1e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++fla +sHE+RTPL+aI+g+++++ + ++ + +
CP001074_0 1024 HKTDFLARVSHEIRTPLNAIIGFSDMMAG------ERFGPIGHPR-- 1062

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y ey + i r++++ l+++ndlLd+s+ieag
CP001074_0 1063 ---------YIEYANDIGRSGRHVLDIVNDLLDISKIEAG 1093

CP001074_1764: domain 1 of 1, from 289 to 357: score 59.6, E = 1.6e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+a++sHE+RTPL+ I ++a+ Ll+++ ++ +e +
CP001074_1 289 LQRQFVAMASHEFRTPLAIIDAAAQRLLRKG-------GAVEPEFL- 327

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e i+ ++ r+ +L + +L r+++g
CP001074_1 328 ----------SDKAEQIRASVSRIVDLMESILSAGRLDTG 357

CP001074_0688: domain 1 of 1, from 496 to 564: score 54.8, E = 3.7e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ef+ +sH+L+ PL ++ ++ Lle+++ ++l+++
CP001074_0 496 DLDEFAYIASHDLKEPLRGLHNHSRFLLEDYE------DKLDDDG-- 534

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+++ r ++r+++L+ndlL +sr++ +
CP001074_0 535 ----------VRRLNRLVRLSQRMEKLVNDLLYFSRLGRQ 564

CP001074_3097: domain 1 of 1, from 402 to 470: score 50.5, E = 6.1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +a+++HE+++P+++Ir+ya+ ++++ld ++++
CP001074_3 402 ILGQVAAGVAHEINQPVATIRAYADNARTFLD------RGQTAPA-- 440

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e l+ i +er+ ++ ++l ++r + g
CP001074_3 441 ----------GENLQNIAALTERIGSITEELKSFARKGRG 470

CP001074_2008: domain 1 of 1, from 141 to 205: score 50.1, E = 7.9e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++++l+HE+++PL++Irg+a+lL+ ++ +++
CP001074_2 141 SVTGLASMLAHEIKNPLSGIRGAAQLLEQ---------SAVDDDR-- 176

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ i +e++r+ +L++++ +s +
CP001074_2 177 -----------ALTRLICDETDRIVSLVDRMEVFSDERPV 205

CP001074_2026: domain 1 of 1, from 507 to 579: score 48.7, E = 2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++ ++ ++HE+++PLt I++ ae +++++ ++ ++++ ++
CP001074_2 507 AWGDVARRIAHEIKNPLTPIQLSAERIQRRY----GKQIDQDDRTV- 548

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++ti+r++ + r+++++ ++r+ +
CP001074_2 549 ---------FDQCTDTIIRQVGDIGRMVDEFSAFARMPKP 579

CP001074_2764: domain 1 of 1, from 348 to 416: score 48.6, E = 2.2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+a++sHE+RTPL+ I ++a+ L + + t+ s + +
CP001074_2 348 LQRQFVAMASHEFRTPLAIIDAAAQRLCR-------STTNVSGDYV- 386

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e +i++++ r+ +L + +L r+e+g
CP001074_2 387 ----------HEKAGVIRSAVVRMVDLMESILASGRLETG 416

CP001074_0627: domain 1 of 1, from 801 to 866: score 44.5, E = 3.1e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+a++ H++ +PL+a r+y+++L e + ++
CP001074_0 801 GKTRFFAAAGHDILQPLNAARLYSSALVE---------RMAQSDN-- 836

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ i++++e+ + ++ +Ld+sr+++g
CP001074_0 837 ----------SPIVRNIDSALESVETILGAVLDISRLDTG 866

CP001074_0059: domain 1 of 1, from 212 to 278: score 43.1, E = 7.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++a+++HEL TPL++I+ a+ +++ el +++r
CP001074_0 212 QLDGLAAAAAHELGTPLATISVVAKEMER----------ELKDDDR- 247

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+re + +++++er+++++++l +ls ++
CP001074_0 248 ---------FREDVMLLRSQSERCRDILRRLTTLSSEDEA 278

CP001074_0686: domain 1 of 1, from 139 to 205: score 42.8, E = 9.3e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+++++H+L+ PL +I+ ++ +L +++l++e+
CP001074_0 139 SLEIFTRAMAHDLKEPLRTIKSFSRILHG--------SAALPAED-- 175

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+l+ +l++a+++++Li + ++++ea
CP001074_0 176 ----------RELLDYVLSAADHMEDLIVKVSGFTKLEAY 205

CP001074_1371: domain 1 of 1, from 241 to 306: score 40.5, E = 4.2e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ n++H+L+TPLt +r a +l+ ++++r
CP001074_1 241 GLRQVSDNIAHDLKTPLTRLRNKAADALD----------MTDADTR- 276

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +le i++e+++l r n lL +sr eag
CP001074_1 277 ----------RAALEGIISESDQLIRTFNALLMISRVEAG 306

CP001074_3804: domain 1 of 1, from 238 to 303: score 39.0, E = 1.1e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+ n+sH+LRTPL+ Ir+ + l + + s +++
CP001074_3 238 ALRHFTGNASHQLRTPLAIIRTQLALSAR----------AGSLDEA- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + ++++ + +r++ +lL +++i+a
CP001074_3 274 ----------QAAALKGDQAVAHAERILAQLLLMAKIDAA 303

CP001074_2464: domain 1 of 1, from 322 to 388: score 37.3, E = 3.3e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ L +++g++elL + + +++++
CP001074_2 322 AIGQLTGGVAHDFNNLLMVVLGNLELLGK---------HVTGDPKA- 358

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ +l+ a+r +L ++lL ++r +
CP001074_2 359 ----------TRLVDGALQGARRGAALTQRLLAFARRQDL 388

CP001074_0692: domain 1 of 1, from 20 to 83: score 34.4, E = 2.2e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +fla++sH+L PL I +yaelLl++l+ ++l++eq
CP001074_0 20 RIKRFLATASHDLQSPLRHIAMYAELLLDDLE------ETLDSEQ-- 58

peLRledpeyreyletilreaerllrLindlLdls<-*
+ l+ i + a+ ++L l+ l+
CP001074_0 59 ----------LQSLRMIMEKAQAAQHLTKALMSLA 83

CP001074_2471: domain 1 of 1, from 235 to 293: score 33.4, E = 4.2e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + la++sH+L TP+t +r+ ae++++ s+e+
CP001074_2 235 ERVQILAAISHDLQTPITRMRLRAEMAED------------SPEK-- 267

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +++ ++rL++d ++r +g
CP001074_2 268 --------------DKLVNDLGEIQRLVQDGIAYARSAHG 293

CP001074_0123: domain 1 of 1, from 178 to 249: score 33.1, E = 5.4e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkv.lagdtelseeqr
+++e++++l+HEL +PL++I +y+e + + ++ ++ +see
CP001074_0 178 ELGEMASTLAHELSQPLSSIAAYSEGCGH----LvAGNRPGRSEEL- 219

lpeLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+l i + a ++++++++++ +a
CP001074_0 220 -----------REALLEITHHALWAGSIVQNVREFAERGAS 249

CP001074_1587: domain 1 of 1, from 167 to 235: score 33.0, E = 5.4e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ +++H++++ L+ I+g+++l+++++ t ++ +
CP001074_1 167 TIGQLTGGVAHDFNNMLAIIIGNLDLAQRRM-------TGHEDPRL- 205

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+ +++ a+r L +lL +sr +
CP001074_1 206 ----------LNSLQNARDGAQRAAVLTARLLAFSRQQPL 235

CP001074_3124: domain 1 of 1, from 255 to 313: score 31.0, E = 2e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +l+++sH+LRT Lt ++ + l+ +
CP001074_3 255 QRTAMLSGVSHDLRTILTRFKLQLALAGD------------------ 283

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+ + ++++ ++ +++ + ++r e +
CP001074_3 284 ----------NPDLHGLNDDVNDMQTMLEAYMAFARGEVE 313

CP001074_2651: domain 1 of 1, from 244 to 302: score 30.9, E = 2.2e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ fl +++HELRTP++ +++ ++ e
CP001074_2 244 KRQHFLIDAAHELRTPIAIMQTRIDGTPE------------------ 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++l+++ rl + ++lLd++r ++
CP001074_2 273 ----------GQDRRRLLDDVARLAQTAEQLLDFERNDQA 302


Histogram of all scores:
score obs exp (one = represents 15 sequences)
----- --- ---
-14 13 0|=
-13 52 3|*===
-12 204 99|======*=======
-11 421 514|============================= *
-10 774 955|==================================================== *
-9 861 986|==========================================================*
-8 734 738|=================================================*
-7 527 465|==============================*=====
-6 356 267|=================*======
-5 166 146|=========*==
-4 80 78|=====*
-3 53 41|==*=
-2 35 21|=*=
-1 16 11|*=
0 8 5|*
1 6 3|*
2 2 1|*
> 3 35 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 231.3274
P(chi-square) = 2e-312

Total sequences searched: 4358

Whole sequence top hits:
tophits_s report:
Total hits: 28
Satisfying E cutoff: 28
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 28
Satisfying E cutoff: 28
Total memory: 32K


Acknowledgements:

This research is funded by:

Developed by: