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Classification of phyla is from NCBI page
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4 accessions found for Rhizobium etli CIAT 652  

Data for CP001077  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001077.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001077_0458 CDS_492769-486467 78.7 1.4e-22 2
CP001077_0522 CDS_570649-568307 62.9 4.4e-18 1
CP001077_0510 CDS_555785-554448 57.4 1.5e-16 1
CP001077_0411 CDS_437210-440845 39.6 1.7e-11 1
CP001077_0457 CDS_486456-484783 35.4 2.7e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001077_0458 1/2 1424 1492 .. 1 87 [] 78.6 1.5e-22
CP001077_0522 1/1 547 615 .. 1 87 [] 62.9 4.4e-18
CP001077_0510 1/1 227 292 .. 1 87 [] 57.4 1.5e-16
CP001077_0411 1/1 988 1058 .. 1 87 [] 39.6 1.7e-11
CP001077_0457 1/1 189 255 .. 1 87 [] 35.4 2.7e-10

Alignments of top-scoring domains:
CP001077_0458: domain 1 of 2, from 1424 to 1492: score 78.6, E = 1.5e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++I+ + + L e d++ls +q
CP001077_0 1424 YKSEFLANMSHELRTPLNSILILGQQLGE------NPDGNLSGKQ-- 1462

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ +ti+ ++ ll+Li+d+Ldls+ie+g
CP001077_0 1463 ----------VEFAKTIHGAGTDLLNLISDILDLSKIESG 1492

CP001077_0522: domain 1 of 1, from 547 to 615: score 62.9, E = 4.4e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f++++sHE+RTPL++I g+a+ L + + +++++e +
CP001077_0 547 LQRQFVSMASHEFRTPLAVIDGAAQRLIR-------RKEAATPEFL- 585

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e + i++++ r+l+L + +L r+++g
CP001077_0 586 ----------AEKADQIRSSVSRMLELMESILAAGRLDHG 615

CP001077_0510: domain 1 of 1, from 227 to 292: score 57.4, E = 1.5e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f++n++H+LRTPL+ I++ a+++ + +e +
CP001077_0 227 AQRRFVSNAAHQLRTPLALISTQASVAAR---------EEDAARR-- 262

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+l ++ ++++++rL ++lL+lsr+e g
CP001077_0 263 ----------DEALAALRTSTRQISRLASQLLTLSRAEPG 292

CP001077_0411: domain 1 of 1, from 988 to 1058: score 39.6, E = 1.7e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ e+ a+++HE ++PL+a+ +++++++++l ++ + +r+
CP001077_0 988 SLAELSASIAHEVNQPLAAVVANSHACQRWLM------ADPPNMERA 1028

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +e+i+r+a++ + +++++ l + a
CP001077_0 1029 ----------QRTVERIIRDANSAADVVSRIRALFKQSAD 1058

CP001077_0457: domain 1 of 1, from 189 to 255: score 35.4, E = 2.7e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++ +++H++++ L a++g ++lL++ + +++e
CP001077_0 189 TIGHLTGGVAHDFNNLLMAVLGSLSLLKK--------RLPADERS-- 225

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ ++++aer +L ++lL ++r ++
CP001077_0 226 ----------ERLVTNAIQAAERGTALTQRLLAFARRQEL 255


Histogram of all scores:
score obs exp (one = represents 4 sequences)
----- --- ---
-14 3 0|=
-13 4 0|=
-12 33 22|=====*===
-11 80 115|==================== *
-10 155 214|======================================= *
-9 209 221|===================================================== *
-8 163 165|=========================================*
-7 136 104|=========================*========
-6 97 60|==============*==========
-5 35 33|========*
-4 20 17|====*
-3 13 9|==*=
-2 9 4|*==
-1 11 2|*==
> 0 8 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 67.3002
P(chi-square) = 5.139e-11

Total sequences searched: 989

Whole sequence top hits:
tophits_s report:
Total hits: 5
Satisfying E cutoff: 5
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 5
Satisfying E cutoff: 5
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: