Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
7 projects found  

1 accessions found for Sulfurihydrogenibium sp. YO3AOP1  

Data for CP001080  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001080.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001080_0727 CDS_775279-776292 65.0 1.8e-18 1
CP001080_0345 CDS_369617-368316 60.8 2.9e-17 1
CP001080_0123 CDS_143070-141673 56.1 6.3e-16 1
CP001080_1005 CDS_1077227-1075260 37.1 1.5e-10 1
CP001080_0575 CDS_605348-606910 36.5 2.2e-10 1
CP001080_1696 CDS_1814193-1812178 31.7 5.1e-09 1
CP001080_0135 CDS_157124-155907 27.4 8.5e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001080_0727 1/1 116 181 .. 1 87 [] 65.0 1.8e-18
CP001080_0345 1/1 218 284 .. 1 87 [] 60.8 2.9e-17
CP001080_0123 1/1 241 307 .. 1 87 [] 56.1 6.3e-16
CP001080_1005 1/1 444 515 .. 1 87 [] 37.1 1.5e-10
CP001080_0575 1/1 297 362 .. 1 87 [] 36.5 2.2e-10
CP001080_1696 1/1 447 516 .. 1 83 [. 31.7 5.1e-09
CP001080_0135 1/1 200 258 .. 1 87 [] 27.4 8.5e-08

Alignments of top-scoring domains:
CP001080_0727: domain 1 of 1, from 116 to 181: score 65.0, E = 1.8e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak +f++n+sHEL+TP+++++ + e+++e + +++
CP001080_0 116 AKKDFVSNVSHELKTPISVLKSAMETIEE---------EIKDSNI-- 151

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ +++ ++++++LindlL l+r+e++
CP001080_0 152 ----------LKFVDMAKKRINQMDSLINDLLILARLESQ 181

CP001080_0345: domain 1 of 1, from 218 to 284: score 60.8, E = 2.9e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f+ +lsHEL+TPL+ Ir+ ++l+l+ ++s ++
CP001080_0 218 TQKFFFYHLSHELKTPLSIIRTSTDLALR---------KPRSQAEM- 254

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+l +i++++er ++ ++ lL l r+e++
CP001080_0 255 ----------REFLLSIKSAVERASQVVEKLLLLYRLETQ 284

CP001080_0123: domain 1 of 1, from 241 to 307: score 56.1, E = 6.3e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ e + +++H+L+TP++ Ir+++e +l+ ++s+++
CP001080_0 241 TLKETTESIAHDLKTPIARIRAASENMLM---------KNKSSKE-- 276

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l i++e+e+l+++i dlL++s++e+g
CP001080_0 277 ---------CSDLLVYIIEETESLNQMIADLLTISKLESG 307

CP001080_1005: domain 1 of 1, from 444 to 515: score 37.1, E = 1.5e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + + ++HE+++PLt I++ ae +l+ + ++ +
CP001080_1 444 MWKDVAQRIAHEIKNPLTPIKLSAERILR--------SWKKQNPN-- 480

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+d ++ +++i +e+++l++L++++ ++ +g
CP001080_1 481 -----FDEIVENSVKIINQETDYLSNLVREFNQFGNSLSG 515

CP001080_0575: domain 1 of 1, from 297 to 362: score 36.5, E = 2.2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e+ a ++HE+++ L +I+ +a +++ + + e +
CP001080_0 297 AMGEMSAKIAHEIKNALYSISNAANYIKT----------NSDNEII- 332

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ ++i++e+ rl+++ +L +s++ ++
CP001080_0 333 ----------KEFGKIIKEESSRLNEMTVSFLNFSKLIEP 362

CP001080_1696: domain 1 of 1, from 447 to 516: score 31.7, E = 5.1e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++a++sHE+++PL+ I +a + ++
CP001080_1 447 VIGRLAAGISHEIKNPLAIINQNAFMVKR------------------ 475

peLR...l.....edpeyreyletilreaerllrLindlLdlsr<-*
R ++l ++ + ++ e +e+i+r + r ++i++lL +s+
CP001080_1 476 ---RiqkLcsnvdNIDNILESIERIERNVIRATDIIERLLNFSK 516

CP001080_0135: domain 1 of 1, from 200 to 258: score 27.4, E = 8.5e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ fl+n++HEL+TP+t + ++elL++ e+
CP001080_0 200 VRKWFLRNIAHELKTPITKGKIAIELLED-------------EKG-- 231

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +e+i +rl+ L+n+lL ++++ +
CP001080_0 232 ----------KQHFEKIF---NRLEFLVNQLLMMEKLATK 258


Histogram of all scores:
score obs exp (one = represents 6 sequences)
----- --- ---
-15 1 0|=
-14 4 0|=
-13 31 1|*=====
-12 94 39|======*=========
-11 190 204|================================ *
-10 307 378|==================================================== *
-9 298 390|================================================== *
-8 284 292|================================================*
-7 173 184|============================= *
-6 122 106|=================*===
-5 89 58|=========*=====
-4 55 31|=====*====
-3 29 16|==*==
-2 14 8|=*=
-1 8 4|*=
0 7 2|*=
1 3 1|*
2 1 0|=
> 3 11 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 163.2173
P(chi-square) = 7.016e-30

Total sequences searched: 1721

Whole sequence top hits:
tophits_s report:
Total hits: 7
Satisfying E cutoff: 7
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 7
Satisfying E cutoff: 7
Total memory: 23K


Acknowledgements:

This research is funded by:

Developed by: