hmmsearch - search a sequence database with a profile HMM

HMMER 2.3.2 (Oct 2003)

Copyright (C) 1992-2003 HHMI/Washington University School of Medicine

Freely distributed under the GNU General Public License (GPL)

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HMM file:                   /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HWE_HK.hmm [HWE_HK]

Sequence database:          CP001085.Gprot.fsa

per-sequence score cutoff:  >= 60.0 [TC1]

per-domain score cutoff:    >= 60.0 [TC2]

per-sequence Eval cutoff:   [none]

per-domain Eval cutoff:     [none]

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Query HMM:   HWE_HK

Accession:   PF07536.4

Description: HWE histidine kinase

  [HMM has been calibrated; E-values are empirical estimates]



Scores for complete sequences (score includes all domains):

Sequence Description                                    Score    E-value  N 

-------- -----------                                    -----    ------- ---

	[no hits above thresholds]



Parsed for domains:

Sequence Domain  seq-f seq-t    hmm-f hmm-t      score  E-value

-------- ------- ----- -----    ----- -----      -----  -------

	[no hits above thresholds]



Alignments of top-scoring domains:

	[no hits above thresholds]



Histogram of all scores:

score    obs    exp  (one = represents 2 sequences)

-----    ---    ---

  -16      2      0|=                                                          

  -15      2      0|=                                                          

  -14     34      0|=================                                          

  -13     23      0|============                                               

  -12    110      0|=======================================================    

  -11     86      4|=*=========================================                

  -10     85     56|===========================*===============                

   -9     77    139|=======================================                   *

   -8     67    144|==================================                        *

   -7     31     97|================                                *          

   -6     10     53|=====                     *                                

   -5     10     26|=====       *                                              

   -4      1     12|=    *                                                     

   -3      3      5|==*                                                        

   -2      2      2|*                                                          

   -1      0      1|*                                                          

    0      1      0|=                                                          





% Statistical details of theoretical EVD fit:

              mu =    -7.9989

          lambda =     0.7843

chi-sq statistic =   174.0622

  P(chi-square)  =  9.913e-36



Total sequences searched: 544



Whole sequence top hits:

tophits_s report:

     Total hits:           0

     Satisfying E cutoff:  0

     Total memory:         20K



Domain top hits:

tophits_s report:

     Total hits:           0

     Satisfying E cutoff:  0

     Total memory:         20K