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Classification of phyla is from NCBI page
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35 projects found  

2 accessions found for Desulfobacterium autotrophicum HRM2  

Data for CP001088  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001088.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001088_0034 CDS_31936-27986 102.1 2.6e-30 1
CP001088_0023 CDS_16807-19959 45.0 3.7e-14 1
CP001088_0025 CDS_21283-23910 35.5 1.9e-11 1
CP001088_0033 CDS_27860-27201 34.8 2.9e-11 1
CP001088_0024 CDS_19952-20698 28.7 1.6e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001088_0034 1/1 787 852 .. 1 87 [] 102.1 2.6e-30
CP001088_0023 1/1 678 744 .. 1 87 [] 45.0 3.7e-14
CP001088_0025 1/1 500 566 .. 1 87 [] 35.5 1.9e-11
CP001088_0033 1/1 136 202 .. 1 87 [] 34.8 2.9e-11
CP001088_0024 1/1 155 221 .. 1 87 [] 28.7 1.6e-09

Alignments of top-scoring domains:
CP001088_0034: domain 1 of 1, from 787 to 852: score 102.1, E = 2.6e-30
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+eflan+sHE+RTP+++I+g++ lL + t l++eq
CP001088_0 787 AKGEFLANMSHEIRTPMNGIIGMTGLLMD---------TQLTDEQ-- 822

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y ++++ ++e+llr+in++Ld+s+ieag
CP001088_0 823 ----------RRYARIVQASGESLLRIINEILDFSKIEAG 852

CP001088_0023: domain 1 of 1, from 678 to 744: score 45.0, E = 3.7e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++ +++H++++ L I g++e+Lle + ++
CP001088_0 678 SIGTLAGGIAHDFNNILFPIVGHSEMLLE---------DVSDDNP-- 713

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yre ++ i+ + r ++L+ ++L +sr e+
CP001088_0 714 ---------YRESINEIYTGSLRARDLVHQILAFSRQESS 744

CP001088_0025: domain 1 of 1, from 500 to 566: score 35.5, E = 1.9e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++ +++H++++ L I+g+ae+L e+l +++s+e+
CP001088_0 500 SIGNLAGGIAHDFNNLLYPIIGFAEMLIEDL-------PPKSPEH-- 537

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e + i ++++r +L+ ++L +sr
CP001088_0 538 -----------ESAQAIFNAGKRGCELVKQILAFSRQVDH 566

CP001088_0033: domain 1 of 1, from 136 to 202: score 34.8, E = 2.9e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
e++ ++ HEL++PL +++gy+elLl+ + +++ +
CP001088_0 136 GVLEMAGAVCHELNQPLQTVSGYSELLLM---------DLDPDDPN- 172

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ i+ ++r+ +L + ++ +++ ++
CP001088_0 173 ----------YMMIKNIKAGINRIAELTRKIMNITKYQSK 202

CP001088_0024: domain 1 of 1, from 155 to 221: score 28.7, E = 1.6e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
e++ ++ HE+++P+ +I gy+ lL + d e + e
CP001088_0 155 TVVEMAGAVCHEFNQPIQVINGYCGLLID--------DMEINVES-- 191

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +e il+++ + L +dl+ ++ e+
CP001088_0 192 ----------KDQIEEILKAVSKMGLLTRDLMNITGYETK 221


Histogram of all scores:
score obs exp (one = represents 1 sequences)
----- --- ---
-14 1 0|=
-13 4 0|====
-12 5 1|*====
-11 9 9|========*
-10 12 16|============ *
-9 11 17|=========== *
-8 14 12|===========*==
-7 7 8|=======*
-6 3 4|===*
-5 1 2|=*
-4 0 1|*
> -3 9 -|=========


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 3.8498
P(chi-square) = 0.4267

Total sequences searched: 76

Whole sequence top hits:
tophits_s report:
Total hits: 5
Satisfying E cutoff: 5
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 5
Satisfying E cutoff: 5
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: