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Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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106 projects found  

1 accessions found for Bifidobacterium longum subsp. infantis ATCC 15697  

Data for CP001095  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001095.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001095_0666 CDS_799906-801897 78.6 3.6e-22 1
CP001095_1844 CDS_2083921-2083202 77.3 8.8e-22 1
CP001095_0964 CDS_1188453-1189817 73.3 1.1e-20 1
CP001095_1702 CDS_1937412-1938485 68.7 2.4e-19 1
CP001095_0486 CDS_579018-577717 52.1 1.2e-14 1
CP001095_0349 CDS_419262-420641 47.8 2e-13 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001095_0666 1/1 347 416 .. 1 87 [] 78.6 3.6e-22
CP001095_1844 1/1 18 84 .. 1 87 [] 77.3 8.8e-22
CP001095_0964 1/1 234 299 .. 1 87 [] 73.3 1.1e-20
CP001095_1702 1/1 131 195 .. 1 87 [] 68.7 2.4e-19
CP001095_0486 1/1 202 268 .. 1 87 [] 52.1 1.2e-14
CP001095_0349 1/1 179 245 .. 1 87 [] 47.8 2e-13

Alignments of top-scoring domains:
CP001095_0666: domain 1 of 1, from 347 to 416: score 78.6, E = 3.6e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f++++sHELRTPL+aI gyael ++ ++d + e +
CP001095_0 347 KMKRFVSDASHELRTPLAAIHGYAELYKM------QRDMPGALERA- 386

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e +e i+r+++r+ L++dlL l+r+++g
CP001095_0 387 ----------DESIEHIERSSQRMTVLVEDLLSLARLDEG 416

CP001095_1844: domain 1 of 1, from 18 to 84: score 77.3, E = 8.8e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++f++n+sHE+R+PL+aI+ ya ++++ +++ qr
CP001095_1 18 MKNDFVSNVSHEIRNPLAAIKNYATMMRD---------MDMDKAQR- 54

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e ++ti++++erl++L+ ++L l ++e++
CP001095_1 55 ----------EECVRTIISASERLNALVTNILKLNKLESQ 84

CP001095_0964: domain 1 of 1, from 234 to 299: score 73.3, E = 1.1e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e +a+l+H+L+TPLt+++g+++lL e t+l+eeq
CP001095_0 234 AQREQIASLAHDLKTPLTVMQGNIDLLDE---------TTLDEEQ-- 269

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ yl+ + r++e+++r i + d+sr g
CP001095_0 270 ----------KLYLSYAMRSSEQMRRYIKMMIDISRTSCG 299

CP001095_1702: domain 1 of 1, from 131 to 195: score 68.7, E = 2.4e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++an+sHELRTP++a+++++e + +++ te ++
CP001095_1 131 MRRDMIANVSHELRTPVSALQAMVENMADGV-------TEPTPAN-- 168

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le il +++rl++Li lLdlsrieag
CP001095_1 169 -------------LEGILTQTHRLSDLIAFLLDLSRIEAG 195

CP001095_0486: domain 1 of 1, from 202 to 268: score 52.1, E = 1.2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f++n+sHEL+TP+t+I + +e+L + +++ +e++
CP001095_0 202 LQRSFIRNASHELKTPITTIGTSLEALMA---------QDRFPEDV- 238

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ ++++ + ++Lin lL+lsri++
CP001095_0 239 ----------KPAISHAIEANRKSSELINSLLELSRIQTV 268

CP001095_0349: domain 1 of 1, from 179 to 245: score 47.8, E = 2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+ n+sHEL+TP aI+++ae+ + ++ +++ +
CP001095_0 179 VRRDFVTNVSHELKTPAGAISLLAETVTD---------AADDPDAV- 215

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + +i +e+ rl +L+ l dl r++++
CP001095_0 216 ----------RYFSGRISKESARLTELVHHLIDLQRAQSP 245


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-14 6 0|=
-13 43 1|*=====
-12 124 55|======*=========
-11 259 286|================================= *
-10 405 531|=================================================== *
-9 458 548|==========================================================*
-8 400 410|================================================== *
-7 293 258|================================*====
-6 173 148|==================*===
-5 107 81|==========*===
-4 67 43|=====*===
-3 33 23|==*==
-2 21 12|=*=
-1 11 6|*=
0 4 3|*
1 1 1|*
2 1 0|=
3 2 0|=
> 4 8 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 176.2984
P(chi-square) = 5.948e-32

Total sequences searched: 2416

Whole sequence top hits:
tophits_s report:
Total hits: 6
Satisfying E cutoff: 6
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 6
Satisfying E cutoff: 6
Total memory: 23K


Acknowledgements:

This research is funded by:

Developed by: