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Classification of phyla is from NCBI page
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132 projects found  

1 accessions found for Rhodopseudomonas palustris TIE-1  

Data for CP001096  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001096.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001096_4389 CDS_4789740-4793987 132.5 4.2e-37 2
CP001096_4830 CDS_5275533-5272912 96.1 9e-27 1
CP001096_1840 CDS_2021259-2018668 90.1 4.5e-25 1
CP001096_0317 CDS_340392-338482 89.4 7.1e-25 1
CP001096_2106 CDS_2326513-2324204 87.9 1.8e-24 1
CP001096_1711 CDS_1872314-1875025 86.9 3.6e-24 1
CP001096_2023 CDS_2234522-2236354 84.4 1.8e-23 1
CP001096_2143 CDS_2367903-2366308 83.9 2.6e-23 1
CP001096_5191 CDS_5681897-5680551 78.7 7.5e-22 1
CP001096_1419 CDS_1525346-1521978 75.8 5e-21 1
CP001096_4546 CDS_4976775-4980350 72.6 4.2e-20 1
CP001096_0358 CDS_381583-379838 70.2 1.9e-19 1
CP001096_0082 CDS_91954-89441 70.2 1.9e-19 1
CP001096_3349 CDS_3651218-3648495 68.8 4.8e-19 1
CP001096_0916 CDS_980085-976576 61.6 5.4e-17 1
CP001096_1150 CDS_1242187-1244574 59.4 2.2e-16 1
CP001096_2807 CDS_3121485-3122657 51.0 5.4e-14 1
CP001096_5161 CDS_5647483-5646266 50.1 9.5e-14 1
CP001096_2561 CDS_2824643-2823540 47.2 6.3e-13 1
CP001096_2101 CDS_2314169-2315617 46.7 9.1e-13 1
CP001096_2809 CDS_3124269-3126560 44.2 4.4e-12 1
CP001096_1488 CDS_1598526-1600424 44.0 5.1e-12 1
CP001096_1928 CDS_2127780-2124979 41.9 2.1e-11 1
CP001096_4777 CDS_5214114-5212726 41.7 2.3e-11 1
CP001096_0572 CDS_624891-623569 41.0 3.7e-11 1
CP001096_4654 CDS_5087572-5089098 39.8 8e-11 1
CP001096_4023 CDS_4388046-4389380 39.2 1.2e-10 1
CP001096_1515 CDS_1630069-1635201 38.7 1.7e-10 1
CP001096_3569 CDS_3889656-3891716 38.5 1.9e-10 1
CP001096_3363 CDS_3663737-3666013 37.4 3.7e-10 1
CP001096_0583 CDS_635045-637786 37.4 3.8e-10 1
CP001096_4338 CDS_4732559-4729917 32.9 7.4e-09 1
CP001096_5200 CDS_5691691-5693430 31.9 1.4e-08 1
CP001096_3776 CDS_4129318-4127039 31.3 2.1e-08 1
CP001096_0492 CDS_536095-539325 29.7 5.6e-08 1
CP001096_2349 CDS_2588344-2583206 29.4 7e-08 1
CP001096_3364 CDS_3666017-3668344 29.3 7.4e-08 1
CP001096_1149 CDS_1240729-1242081 28.5 1.3e-07 1
CP001096_2658 CDS_2945153-2943621 27.1 3.2e-07 2

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001096_4830 1/1 371 436 .. 1 87 [] 96.1 9e-27
CP001096_1840 1/1 331 396 .. 1 87 [] 90.1 4.5e-25
CP001096_0317 1/1 122 187 .. 1 87 [] 89.4 7.1e-25
CP001096_2106 1/1 536 605 .. 1 87 [] 87.9 1.8e-24
CP001096_1711 1/1 399 465 .. 1 87 [] 86.9 3.6e-24
CP001096_2023 1/1 355 424 .. 1 87 [] 84.4 1.8e-23
CP001096_2143 1/1 263 332 .. 1 87 [] 83.9 2.6e-23
CP001096_5191 1/1 215 282 .. 1 87 [] 78.7 7.5e-22
CP001096_1419 1/1 672 738 .. 1 87 [] 75.8 5e-21
CP001096_4389 1/2 358 424 .. 1 87 [] 73.9 1.7e-20
CP001096_4546 1/1 964 1033 .. 1 87 [] 72.6 4.2e-20
CP001096_0358 1/1 347 412 .. 1 87 [] 70.2 1.9e-19
CP001096_0082 1/1 605 673 .. 1 87 [] 70.2 1.9e-19
CP001096_3349 1/1 674 742 .. 1 87 [] 68.8 4.8e-19
CP001096_0916 1/1 802 867 .. 1 87 [] 61.6 5.4e-17
CP001096_1150 1/1 423 489 .. 1 87 [] 59.4 2.2e-16
CP001096_4389 2/2 1052 1118 .. 1 87 [] 58.6 3.8e-16
CP001096_2807 1/1 139 194 .. 1 78 [. 51.0 5.4e-14
CP001096_5161 1/1 33 98 .. 1 87 [] 50.1 9.5e-14
CP001096_2561 1/1 134 198 .. 1 87 [] 47.2 6.3e-13
CP001096_2101 1/1 237 303 .. 1 87 [] 46.7 9.1e-13
CP001096_2809 1/1 507 578 .. 1 87 [] 44.2 4.4e-12
CP001096_1488 1/1 400 470 .. 1 87 [] 44.0 5.1e-12
CP001096_1928 1/1 549 615 .. 1 87 [] 41.9 2.1e-11
CP001096_4777 1/1 259 317 .. 1 87 [] 41.7 2.3e-11
CP001096_0572 1/1 210 274 .. 1 87 [] 41.0 3.7e-11
CP001096_4654 1/1 279 350 .. 1 87 [] 39.8 8e-11
CP001096_4023 1/1 232 290 .. 1 87 [] 39.2 1.2e-10
CP001096_1515 1/1 1483 1553 .. 1 87 [] 38.7 1.7e-10
CP001096_3569 1/1 314 382 .. 1 87 [] 38.5 1.9e-10
CP001096_3363 1/1 522 590 .. 1 87 [] 37.4 3.7e-10
CP001096_0583 1/1 537 603 .. 1 87 [] 37.4 3.8e-10
CP001096_4338 1/1 496 562 .. 1 87 [] 32.9 7.4e-09
CP001096_5200 1/1 350 419 .. 1 87 [] 31.9 1.4e-08
CP001096_3776 1/1 530 592 .. 1 79 [. 31.3 2.1e-08
CP001096_0492 1/1 678 744 .. 1 87 [] 29.7 5.6e-08
CP001096_2349 1/1 1490 1555 .. 1 82 [. 29.4 7e-08
CP001096_3364 1/1 537 605 .. 1 87 [] 29.3 7.4e-08
CP001096_1149 1/1 206 301 .. 1 87 [] 28.5 1.3e-07

Alignments of top-scoring domains:
CP001096_4830: domain 1 of 1, from 371 to 436: score 96.1, E = 9e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTP+++++g+a Lle t+l++eq
CP001096_4 371 AKSSFLAMMSHEIRTPMNGVLGLANSLLE---------TKLDPEQ-- 406

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ ti+++++ llr++nd+Ldls++eag
CP001096_4 407 ----------QQAVTTIRDSGDDLLRILNDILDLSKLEAG 436

CP001096_1840: domain 1 of 1, from 331 to 396: score 90.1, E = 4.5e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks f+a++sHE+RTP++a++g+a Lle t l++eq
CP001096_1 331 AKSSFVAMMSHEIRTPMNAVIGLATNLLE---------TRLDAEQ-- 366

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+++ +i+++++ ll++++d+Ld+s++eag
CP001096_1 367 ----------RQAVTSIHDAGDNLLQILDDILDFSKLEAG 396

CP001096_0317: domain 1 of 1, from 122 to 187: score 89.4, E = 7.1e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks++la++sHE+RTPL++I+g++ lLl+ t+ls+eq
CP001096_0 122 AKSRLLAMASHEIRTPLNGIIGMSRLLLD---------TPLSAEQ-- 157

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y + ++ ++e ll+L ++lLd++rieag
CP001096_0 158 ----------ATYAKAVKTSGEALLALTDELLDYARIEAG 187

CP001096_2106: domain 1 of 1, from 536 to 605: score 87.9, E = 1.8e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+flan+sHELRTPL+aI+g++e++ +++ ++l++e+
CP001096_2 536 TKSKFLANMSHELRTPLNAIIGFSEIMGSGMF------GTLGSEK-- 574

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ey + i ++++ll+ ind+Ld+s+ieag
CP001096_2 575 ---------YQEYCHDIMTSGHYLLEVINDILDMSKIEAG 605

CP001096_1711: domain 1 of 1, from 399 to 465: score 86.9, E = 3.6e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak +flan+sHE+RTPL++I+gya+l le d++l +++
CP001096_1 399 AKADFLANMSHEIRTPLNGIIGYADLVLE--------DETLAPDT-- 435

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ + +i +++++l+ +i+d+Ld+s+iea
CP001096_1 436 ----------RRQVMRIFEASDSLRVIIDDILDFSKIEAC 465

CP001096_2023: domain 1 of 1, from 355 to 424: score 84.4, E = 1.8e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHELRTPL+aI+g+++++l l++e r
CP001096_2 355 AKSRFLATMSHELRTPLNAIIGFSDMILQ------DDVLMLGPERR- 394

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ey + i +++++ll+ +n +Ld+s++e+g
CP001096_2 395 ----------KEYAQLINDSGQHLLSVVNGILDMSKMESG 424

CP001096_2143: domain 1 of 1, from 263 to 332: score 83.9, E = 2.6e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla +sHELRTPL+aI+g++e+++ + ++
CP001096_2 263 AKSRFLAQMSHELRTPLNAILGFSEVMKS---------EIFGAHA-- 298

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+p y++y i++++ +ll+Lin++Ldlsrieag
CP001096_2 299 ------VPAYKDYSADIHNSGVHLLNLINEILDLSRIEAG 332

CP001096_5191: domain 1 of 1, from 215 to 282: score 78.7, E = 7.5e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+an+sHELRTPL+a++g++++L+ +++++++++
CP001096_5 215 MRADFVANASHELRTPLAALSGFIDTLQG---------QARDDPKAR 252

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l +++ +a r+ rLi+dlL lsr e
CP001096_5 253 ----------ERFLGIMHAQATRMARLIDDLLSLSRVELS 282

CP001096_1419: domain 1 of 1, from 672 to 738: score 75.8, E = 5e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+ + +lsHELR PL+aI+gya+lL+ d +l++
CP001096_1 672 AKSRYVVGLSHELRSPLNAISGYAQLLEQ--------DNTLPPRP-- 708

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ ++ ++r+a++l+ Li+ lLd+s+ieag
CP001096_1 709 ----------RDQIRLMRRSADHLSGLIDGLLDISKIEAG 738

CP001096_4389: domain 1 of 2, from 358 to 424: score 73.9, E = 1.7e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ f++n+sHE+RTPLt ++ +e +l ++ +eq
CP001096_4 358 AKTAFFSNVSHEFRTPLTLMLSPLEEALG--------RDGIADEQ-- 394

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +l +++r + rll+L+n lLd++rieag
CP001096_4 395 ----------RTLLGIAHRNGLRLLKLVNTLLDFARIEAG 424

CP001096_4546: domain 1 of 1, from 964 to 1033: score 72.6, E = 4.2e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak + la lsHE+R PL+aI+g+ae++ e + ++l+ e
CP001096_4 964 AKADVLARLSHEIRAPLNAIIGFAEVMIE------ERFGPLGNER-- 1002

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y +y + i+ ++er +++dlLdlsrie+g
CP001096_4 1003 ---------YVDYMKDIRASGERVIGIVDDLLDLSRIETG 1033

CP001096_0358: domain 1 of 1, from 347 to 412: score 70.2, E = 1.9e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++f+a++sHEL++PLt++r ++e+L ++++ r
CP001096_0 347 AIERFAADVSHELKNPLTSLRSAVETLPL----------AKTDNSR- 382

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l++i+++++rl+rLi+d+ d sr++a+
CP001096_0 383 ----------ARLLSVIEHDVKRLDRLISDISDASRLDAE 412

CP001096_0082: domain 1 of 1, from 605 to 673: score 70.2, E = 1.9e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k +f+ ++s ELR PLt+I+g+a+ L + + ++l+e+q
CP001096_0 605 IKIDFVHHVSYELRSPLTTIIGFAHFLSD------SSTGPLTEKQ-- 643

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ey++ i +++ l ++in++Ldl+ i+ag
CP001096_0 644 ----------AEYVNYITTSTNALMAIINNILDLASIDAG 673

CP001096_3349: domain 1 of 1, from 674 to 742: score 68.8, E = 4.8e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l ++sH+L+TPL+a++g+a ++++ + ++ls+ qr
CP001096_3 674 LRQALLTSISHDLKTPLAAVLGAATTMRDLA-------PHLSDAQR- 712

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e++ ti +e+erl+r i +lLd++++e+g
CP001096_3 713 ----------TELIGTIVEESERLNRFIANLLDMTKLESG 742

CP001096_0916: domain 1 of 1, from 802 to 867: score 61.6, E = 5.4e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fla++sH++ +PL+a r+ya L e + e+
CP001096_0 802 SKTRFLAAASHDILQPLNAARLYATSLVE---------RQNGGED-- 837

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++e i+++++ ++++i lLd+sr++ag
CP001096_0 838 ----------SRLVENIDESLQAIEEIIGALLDISRLDAG 867

CP001096_1150: domain 1 of 1, from 423 to 489: score 59.4, E = 2.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt Ir +++ L++ +l+ee r
CP001096_1 423 AVGQLTGGVAHDFNNLLTIIRSAVDFLRR---------RDLPEERR- 459

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y++ i + a+r ++L +lL ++r +
CP001096_1 460 ----------RRYVDAISDTADRASKLTGQLLAFARRQPL 489

CP001096_4389: domain 2 of 2, from 1052 to 1118: score 58.6, E = 3.8e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt+Ir a+lL++ el++e +
CP001096_4 1052 AIGQLTGGVAHDFNNMLTVIRSSADLLRR---------RELPPERV- 1088

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y++ i + a+r +L +lL+++r a+
CP001096_4 1089 ----------RRYVDAISDTADRAAKLTGQLLTFARRHAQ 1118

CP001096_2807: domain 1 of 1, from 139 to 194: score 51.0, E = 5.4e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++a+l+HE+++PL++Irg+a+lL+ +s+e+
CP001096_2 139 SVIALAAMLAHEIKNPLSGIRGAAQLLEQ----------QASAED-- 173

peLRledpeyreyletilreaerllrLindl<-*
r +++ i +ea+r+ L++++
CP001096_2 174 ----------RMLTRLICDEADRIVTLVDRM 194

CP001096_5161: domain 1 of 1, from 33 to 98: score 50.1, E = 9.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + la+ +HE RTPLt+I++ +elL + ++l+e +
CP001096_5 33 MIETVLATFAHEVRTPLTGILAVSELLAT---------SDLNERE-- 68

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ ++ti+ ae+l+ L + d +r+++
CP001096_5 69 ----------RRWVDTIKAGAEHLSGLATLFVDAARLGTT 98

CP001096_2561: domain 1 of 1, from 134 to 198: score 47.2, E = 6.3e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ + a+++HELRTPLt +rg ++ L ++++ e+
CP001096_2 134 SMTSWNAAIAHELRTPLTILRGRLQGLTDGVF----------EPS-- 168

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+++++l ++e l+rL++dl+ + +++
CP001096_2 169 ----------DELFRSLLVQVENLSRLVDDLRVVTLSDSQ 198

CP001096_2101: domain 1 of 1, from 237 to 303: score 46.7, E = 9.1e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ e n++H+L+TPLt +r ae +l+ ++se +
CP001096_2 237 GMKEVSDNIAHDLKTPLTRLRNRAEEALA---------RAASESD-- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr +le+ ++e++ l r n lL ++r+eag
CP001096_2 273 ---------YRVALERTIEESDGLIRTFNALLMIARAEAG 303

CP001096_2809: domain 1 of 1, from 507 to 578: score 44.2, E = 4.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++ ++ ++HE+++PLt I++ ae +++++ g ++ +
CP001096_2 507 AWGDVARRIAHEIKNPLTPIQLSAERIKRKF-----GKVIVEDKNI- 547

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ++ti r+++ ++r+++++ ++r+ +
CP001096_2 548 ---------FEQCTDTIVRQVDDIRRMVDEFSRFARMPKP 578

CP001096_1488: domain 1 of 1, from 400 to 470: score 44.0, E = 5.1e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++a+++HE ++PL+aI+ y + +++l +++ + ++
CP001096_1 400 VLGQLAASIAHEVNQPLAAIINYGKSGKRWLA-----RPTSDIGEV- 440

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l++i + a+r + + +++ l+r a+
CP001096_1 441 ----------ADCLDKIVSNANRAAEVVGRVRFLARKSAP 470

CP001096_1928: domain 1 of 1, from 549 to 615: score 41.9, E = 2.1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt+I+g+ae+Ll+el t++++
CP001096_1 549 AIGQLTGGVAHDFNNMLTVISGTAEILLDEL-------TDRPDLV-- 586

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + i+++aer +L ++lL ++r +
CP001096_1 587 -----------TIAKMIDQAAERGADLTRQLLAFARKQPL 615

CP001096_4777: domain 1 of 1, from 259 to 317: score 41.7, E = 2.3e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +la++sH+LRT Lt ++ +el+ + +++
CP001096_4 259 QRTAMLAGVSHDLRTILTRFKLELELIGD-------------APE-- 290

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e ++++++ ++++++ L ++r ++g
CP001096_4 291 -------------TEGMRKDVDEMSAMLEAYLAFARGDSG 317

CP001096_0572: domain 1 of 1, from 210 to 274: score 41.0, E = 3.7e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++a+++HEL TPL++I + + L++ ++++e
CP001096_0 210 QLDGLAAAAAHELGTPLSTIFLISRELEK----------TAPPEM-- 244

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+t++++a+r+++++ + +ls ++a+
CP001096_0 245 ----------ASDLRTLREQAQRCREILGKIAQLSSAGAP 274

CP001096_4654: domain 1 of 1, from 279 to 350: score 39.8, E = 8e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++++l+HEL++PL+aI+ y + ++ +lag+t+ + ++
CP001096_4 279 AMGEMASALAHELNQPLSAISNYMKGSRR----LLAGSTDPNTVKI- 320

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + e++ ++a r ++i++l+d+ ++
CP001096_4 321 ----------ESAMERAAEQALRAGQIIRRLRDFVARGES 350

CP001096_4023: domain 1 of 1, from 232 to 290: score 39.2, E = 1.2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++la++sH+LRTP+t +r+ ae +++
CP001096_4 232 DRTRMLAAISHDLRTPITRMRLRAEFIED------------------ 260

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++++++ +++ +L++ r +a
CP001096_4 261 ----------DHQRTQTLHDLDQMGAMLTAVLTFLRDGAT 290

CP001096_1515: domain 1 of 1, from 1483 to 1553: score 38.7, E = 1.7e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+a++ HE+++P+++I++ +e++l++l+ e+++
CP001096_1 1483 ALGSFAASIVHEINQPIASILAQTEAALRWLN------REQPDIA-- 1521

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ + l +i+++++r +++ l+ l +
CP001096_1 1522 --------EVTQGLTRIRNSGRRTADIVKSLRSLGKQAPA 1553

CP001096_3569: domain 1 of 1, from 314 to 382: score 38.5, E = 1.9e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +l+H++++ L++I+g +el+ +
CP001096_3 314 AVGQLTGGLAHDFNNLLAGISGSLELMSS---------RIRQGRV-- 349

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+++y+ ++ +++r +L +lL ++r ++
CP001096_3 350 -------GEIEKYVVAAQGAVKRAASLTHRLLAFARRQTL 382

CP001096_3363: domain 1 of 1, from 522 to 590: score 37.4, E = 3.7e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+ +sH+++ PL I ++a lL ++ e+++e +
CP001096_3 522 ELESFAHVASHDIKEPLRHIEAFAGLLADNI-------REMGDERL- 560

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ i+++++rl++Lindl ++s+++
CP001096_3 561 ----------GVMVSGIEKSSRRLRNLINDLAEFSQLGRR 590

CP001096_0583: domain 1 of 1, from 537 to 603: score 37.4, E = 3.8e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H+L++ Lt+I g +e+L + + + + +
CP001096_0 537 AIGQLTGGVAHDLNNILTVITGGIEILAD---------GVSDRPGL- 573

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +++++ r ++L lL +sr +
CP001096_0 574 ----------KDVAAMVDQAVTRASDLTHGLLSFSRKQPL 603

CP001096_4338: domain 1 of 1, from 496 to 562: score 32.9, E = 7.4e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ +++H++++ L+aI+++ + Ll+ ++ +++
CP001096_4 496 TIGQLAGGIAHDFNNVLSAIMMANDFLLN--------AHKPTDPS-- 532

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + i++ a r L+++lL +sr ++
CP001096_4 533 ----------FQDIMQIKQNATRAATLVRQLLAFSRKQTL 562

CP001096_5200: domain 1 of 1, from 350 to 419: score 31.9, E = 1.4e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+e l +++H+L++PL +I+g +e+L e ++ +e s +++
CP001096_5 350 FKNEILGTVAHDLKNPLGVILGRTEMLTE------LIGAESSKDHV- 389

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ i+++++rl +++ l + ++a
CP001096_5 390 ----------IAQVDHIRDATRRLTLMVDHLISDAMADAF 419

CP001096_3776: domain 1 of 1, from 530 to 592: score 31.3, E = 2.1e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e a+++HE ++PL+aI ++ +++l++ld +++ + +++
CP001096_3 530 TLGEISATIAHEVNQPLAAIVANGQACLRFLD-----RPAPDLDDV- 570

peLRledpeyreyletilreaerllrLindlL<-*
r ++e i ++++r + i++++
CP001096_3 571 ----------RGAVEWIVKDGNRAADVIRRVR 592

CP001096_0492: domain 1 of 1, from 678 to 744: score 29.7, E = 5.6e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++ +++H++++ Lt+I g+++++ + + ++ +++
CP001096_0 678 SIGQLTGGIAHDFNNMLTVITGTIDIISD---------GVADQPHL- 714

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + i ++a+r +L + lL ++r +
CP001096_0 715 ----------AAIAKLISEAADRGAELTRLLLAFARKQPL 744

CP001096_2349: domain 1 of 1, from 1490 to 1555: score 29.4, E = 7e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e++ +++HE+++PLtaI+++a+++l++l+ e+++
CP001096_2 1490 AIGELVISIAHEINQPLTAIITNADVCLRWLN------NEQPSIA-- 1528

peLRledpeyreyletilreaerllrLindlLdls<-*
e + + +++++ ++r + ++ ++ l+
CP001096_2 1529 --------EAKNAASRVIENGRRAANVVQTIRGLA 1555

CP001096_3364: domain 1 of 1, from 537 to 605: score 29.3, E = 7.4e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+ ++H+L+ PL I ++a lL + +l
CP001096_3 537 ELESFAYVAAHDLKEPLRHIEAFAGLLND---------------LLL 568

peLR..ledpeyreyletilreaerllrLindlLdlsrieag<-*
pe+R++l +++ i+ +++rl++Lindl ++sri+ +
CP001096_3 569 PEARsrL-----SLMVNGIEASSRRLRALINDLAEYSRIGRQ 605

CP001096_1149: domain 1 of 1, from 206 to 301: score 28.5, E = 1.3e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldk....v.lagdtels
++++++a+++HEL++P++ I g++++L ++ d+ + +++ ++++ +
CP001096_1 206 SLGRLVAGVAHELNNPISFIYGNIHTLDRYRDRmsayLgAIHRGAEP 252

eeqrlpeLR..l....edpeyreyletilreaerllrLindlLdlsriea
+e +LR++l+ + y ++e l+ a r + + +l+ ls +
CP001096_1 253 AEI--ERLRrdLkidaLLADYGSLIEGTLEGAMRVADVVKNLRRLSFPKS 300

g<-*
g
CP001096_1 301 G 301


Histogram of all scores:
score obs exp (one = represents 19 sequences)
----- --- ---
-15 1 0|=
-14 16 0|=
-13 84 3|*====
-12 220 119|======*=====
-11 486 621|========================== *
-10 895 1153|================================================ *
-9 1078 1191|========================================================= *
-8 850 891|============================================= *
-7 660 562|=============================*=====
-6 404 323|================*=====
-5 236 177|=========*===
-4 126 94|====*==
-3 58 50|==*=
-2 36 26|=*
-1 25 13|*=
0 12 7|*
1 3 3|*
2 4 1|*
3 1 1|*
4 1 0|=
5 1 0|=
6 1 0|=
7 1 0|=
8 0 0|
9 0 0|
10 1 0|=
11 0 0|
12 2 0|=
13 1 0|=
14 0 0|
15 0 0|
> 16 43 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 267.6944
P(chi-square) = 0

Total sequences searched: 5246

Whole sequence top hits:
tophits_s report:
Total hits: 39
Satisfying E cutoff: 39
Total memory: 22K

Domain top hits:
tophits_s report:
Total hits: 39
Satisfying E cutoff: 39
Total memory: 36K


Acknowledgements:

This research is funded by:

Developed by: