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Classification of phyla is from NCBI page
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41 projects found  

1 accessions found for Chlorobium limicola DSM 245  

Data for CP001097  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001097.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001097_1999 CDS_2293445-2290473 102.0 9e-29 1
CP001097_1044 CDS_1189392-1186729 96.8 2.6e-27 1
CP001097_0745 CDS_845047-846819 95.3 6.7e-27 1
CP001097_1873 CDS_2166815-2162622 95.0 8.4e-27 1
CP001097_0663 CDS_762360-760285 86.8 1.7e-24 1
CP001097_0166 CDS_193271-193966 85.2 5e-24 1
CP001097_1450 CDS_1625105-1622325 84.0 1.1e-23 1
CP001097_1675 CDS_1914026-1915852 73.3 1.2e-20 1
CP001097_1251 CDS_1392141-1393628 62.7 1.2e-17 1
CP001097_1247 CDS_1389967-1387928 49.1 8.5e-14 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001097_1999 1/1 337 402 .. 1 87 [] 102.0 9e-29
CP001097_1044 1/1 370 435 .. 1 87 [] 96.8 2.6e-27
CP001097_0745 1/1 363 430 .. 1 87 [] 95.3 6.7e-27
CP001097_1873 1/1 872 937 .. 1 87 [] 95.0 8.4e-27
CP001097_0663 1/1 296 362 .. 1 87 [] 86.8 1.7e-24
CP001097_0166 1/1 1 69 [. 1 87 [] 85.2 5e-24
CP001097_1450 1/1 558 624 .. 1 87 [] 84.0 1.1e-23
CP001097_1675 1/1 383 451 .. 1 87 [] 73.3 1.2e-20
CP001097_1251 1/1 273 339 .. 1 87 [] 62.7 1.2e-17
CP001097_1247 1/1 464 533 .. 1 87 [] 49.1 8.5e-14

Alignments of top-scoring domains:
CP001097_1999: domain 1 of 1, from 337 to 402: score 102.0, E = 9e-29
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+flan+sHE+RTP+++++g++++Ll+ t l+ eq
CP001097_1 337 AKSRFLANMSHEIRTPMNGVIGMSDILLD---------TSLDIEQ-- 372

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y+eti+++++ ll++ind+Ld+s+iea+
CP001097_1 373 ----------RKYVETIISSGKNLLKIINDILDFSKIEAN 402

CP001097_1044: domain 1 of 1, from 370 to 435: score 96.8, E = 2.6e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+f+an+sHE+RTPL++++g+++lL + t+l++ q
CP001097_1 370 AKSDFIANMSHEIRTPLNGLIGFSSLLMK---------TTLDDVQ-- 405

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y++t+ ++a++ll Lind+Ldls+ieag
CP001097_1 406 ----------FHYINTVNNSAKQLLGLINDILDLSKIEAG 435

CP001097_0745: domain 1 of 1, from 363 to 430: score 95.3, E = 6.7e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f++++sHELRTPLt+I+gy+e+Lle +++ +++++
CP001097_0 363 IRRDFVSSVSHELRTPLTSIKGYTETLLE---------GAMHDPEHA 400

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l++il+e+e+l +L+nd+Ldlsrie+g
CP001097_0 401 ----------TAFLQIILKESEQLTALVNDVLDLSRIESG 430

CP001097_1873: domain 1 of 1, from 872 to 937: score 95.0, E = 8.4e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHE+RTP+++++g++ lLl+ t l eeq
CP001097_1 872 AKSEFLANMSHEIRTPMNGVIGMTRLLLN---------TSLAEEQ-- 907

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + +t+l ++e+ll ind+Ld+s+ieag
CP001097_1 908 ----------RSFAQTALASGESLLTVINDILDFSKIEAG 937

CP001097_0663: domain 1 of 1, from 296 to 362: score 86.8, E = 1.7e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHE+RTPL++I+g++e+Ll+ + l+ q+
CP001097_0 296 AKSEFLANISHEIRTPLNGIIGMSEMLLD---------ASLDRLQQ- 332

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r y ti +a+ l++Li ++Ld+s+ e+g
CP001097_0 333 ----------RHYCATIFVSAKKLNQLITNILDFSKVESG 362

CP001097_0166: domain 1 of 1, from 1 to 69: score 85.2, E = 5e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++f++++sHELRTPL +I+g++ +Ll+e+ +el e+r
CP001097_0 1 MKNDFISTVSHELRTPLFSILGFTGTLLREQ-------DELERETR- 39

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e++++i++e++rl++Li+d+L +s+i++g
CP001097_0 40 ----------MEFISIIHDESKRLSALIEDVLMISKIDSG 69

CP001097_1450: domain 1 of 1, from 558 to 624: score 84.0, E = 1.1e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ fl n+sHE+RTP+++I+g++elL+e + l+ ++
CP001097_1 558 LKTCFLENMSHEIRTPMNGILGFSELLKE---------PLLDGSKK- 594

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
ey+e i+++++r+l++indl d+s+ieag
CP001097_1 595 ----------DEYIELIHQSGKRMLSIINDLIDISKIEAG 624

CP001097_1675: domain 1 of 1, from 383 to 451: score 73.3, E = 1.2e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ +a++sH+LRTPLta+r+ ++lLle + ++l+ +q
CP001097_1 383 LKRSVIATVSHQLRTPLTALRMSIHLLLE------EHTGHLNGQQ-- 421

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l +++e+erl ++++dlLd+ rie+g
CP001097_1 422 ----------ADLLLAAREESERLVHILDDLLDINRIESG 451

CP001097_1251: domain 1 of 1, from 273 to 339: score 62.7, E = 1.2e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f++++sHEL+TPL++++g++e+L + ++ e+
CP001097_1 273 REKQFTSDASHELKTPLASLKGTLEVLVR---------KPREREH-- 308

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+e ++ l+e++r++rLi++lL l+r e++
CP001097_1 309 ---------YEERIRFCLKELDRMSRLIEQLLVLARYESN 339

CP001097_1247: domain 1 of 1, from 464 to 533: score 49.1, E = 8.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++++++HE+R+PL+aI +a+ L e+ +++ +e++
CP001097_1 464 AMGELASGVAHEIRNPLNAIGILAQRLDIEF------SPAVDEPE-- 502

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr +++t+ +e++rl+++i+++L + r
CP001097_1 503 ---------YRHLVRTVVSEVHRLNAIIQRFLKFGRPPLL 533


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-15 2 0|=
-14 9 0|==
-13 43 1|*=====
-12 108 55|======*=======
-11 271 288|================================== *
-10 425 535|====================================================== *
-9 457 552|==========================================================*
-8 416 413|===================================================*
-7 277 260|================================*==
-6 146 150|==================*
-5 119 82|==========*====
-4 61 44|=====*==
-3 38 23|==*==
-2 28 12|=*==
-1 9 6|*=
> 0 25 -|====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 144.4156
P(chi-square) = 2.055e-25

Total sequences searched: 2434

Whole sequence top hits:
tophits_s report:
Total hits: 10
Satisfying E cutoff: 10
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 10
Satisfying E cutoff: 10
Total memory: 24K


Acknowledgements:

This research is funded by:

Developed by: