Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
41 projects found  

1 accessions found for Chlorobaculum parvum NCIB 8327  

Data for CP001099  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001099.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001099_0649 CDS_705269-707059 95.8 4.1e-27 1
CP001099_1188 CDS_1326005-1324509 64.6 2.9e-18 1
CP001099_1803 CDS_2024654-2023305 54.1 2.7e-15 1
CP001099_0771 CDS_846028-848796 53.4 4.3e-15 1
CP001099_1897 CDS_2133654-2135432 52.3 8.9e-15 1
CP001099_1338 CDS_1479290-1481374 38.2 8.5e-11 1
CP001099_1299 CDS_1436693-1440886 33.8 1.6e-09 1
CP001099_0491 CDS_534048-532102 33.2 2.3e-09 1
CP001099_0756 CDS_828122-830518 32.1 4.6e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001099_0649 1/1 363 430 .. 1 87 [] 95.8 4.1e-27
CP001099_1188 1/1 272 338 .. 1 87 [] 64.6 2.9e-18
CP001099_1803 1/1 224 289 .. 1 87 [] 54.1 2.7e-15
CP001099_0771 1/1 536 602 .. 1 87 [] 53.4 4.3e-15
CP001099_1897 1/1 216 282 .. 1 87 [] 52.3 8.9e-15
CP001099_1338 1/1 325 391 .. 1 87 [] 38.2 8.5e-11
CP001099_1299 1/1 1024 1090 .. 1 87 [] 33.8 1.6e-09
CP001099_0491 1/1 273 339 .. 1 87 [] 33.2 2.3e-09
CP001099_0756 1/1 428 494 .. 1 87 [] 32.1 4.6e-09

Alignments of top-scoring domains:
CP001099_0649: domain 1 of 1, from 363 to 430: score 95.8, E = 4.1e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f++++sHELRTPL++I+gy+e+Lle ++ ++++++
CP001099_0 363 TRRDFVSSVSHELRTPLASIKGYTETLLE---------GAVNDPEHA 400

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l++i++e+e+l +Lind+Ldlsrie+g
CP001099_0 401 ----------TAFLRIIQQESEQLTALINDVLDLSRIESG 430

CP001099_1188: domain 1 of 1, from 272 to 338: score 64.6, E = 2.9e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+++++HEL+TPL++++g++e+L + ++ +e+
CP001099_1 272 REKQFTSDAAHELKTPLSVVKGTLEVLVR---------KPREAEH-- 307

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ +++ l e++r+ rLi++lL l+r e++
CP001099_1 308 ---------YESRVRICLAELNRMARLIDQLLMLARYESQ 338

CP001099_1803: domain 1 of 1, from 224 to 289: score 54.1, E = 2.7e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a+++HELR PLta+++ ae L+ + s++++
CP001099_1 224 QQRRFIADAAHELRSPLTALSLQAENLRQ----------AGSADEM- 259

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l +++ +er ++L +lL l+r +a+
CP001099_1 260 ----------RARLAPLQSGIERARQLTAQLLNLARVQAQ 289

CP001099_0771: domain 1 of 1, from 536 to 602: score 53.4, E = 4.3e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++ +++H+L++ Lt I+gy+e+Ll+ + +e+
CP001099_0 536 SIGRLAGGIAHDLNNLLTPILGYSEMLLK---------RIREPEKS- 572

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y+e+i+++a ++L+++lL +s ++
CP001099_0 573 ----------KQYVEVIHHAALKSRELVRQLLAFSSRQSL 602

CP001099_1897: domain 1 of 1, from 216 to 282: score 52.3, E = 8.9e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++ +++H++++ Lt I+gy+e+ l + ++ +
CP001099_1 216 TIGTLAGGIAHDFNNILTPILGYSEMGLG---------SLDEDDPM- 252

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
ey+ i ++aer ++L++++L++sr++ g
CP001099_1 253 ----------YEYFTEIMQAAERAQKLVSQILTFSRAQDG 282

CP001099_1338: domain 1 of 1, from 325 to 391: score 38.2, E = 8.5e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++ +++H++++ L++I+g++e+ le + + ++
CP001099_1 325 SIGRLAGGIAHDINNGLAVILGHTEIVLE---------QVSPKGTI- 361

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e l+ i++++ +Li++lL ++r ++
CP001099_1 362 ----------TENLQHIKNSTVKAANLIQQLLAFARKQTI 391

CP001099_1299: domain 1 of 1, from 1024 to 1090: score 33.8, E = 1.6e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++ +++H++++ Lt I+gyae+ + +e + ++
CP001099_1 1024 TIGTLAGGIAHDFNNILTPILGYAEMGSILM-------QENNLPH-- 1061

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ i ++aer +L++++L +sr+e
CP001099_1 1062 -----------DFYTQIMQAAERAKNLVSQILMFSRAEKA 1090

CP001099_0491: domain 1 of 1, from 273 to 339: score 33.2, E = 2.3e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ +++H++++ L+aI+g++el l++ld ++ + +
CP001099_0 273 LVGQLAGGIAHDFNNALAAIIGNTELVLKKLD------PAHPTVSN- 312

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ i+ a r +L ++lL ++r +
CP001099_0 313 -------------IRDIHTLATRSADLTRQLLAFARKQVA 339

CP001099_0756: domain 1 of 1, from 428 to 494: score 32.1, E = 4.6e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ +++H++++ L +I+g++el+ + + l++
CP001099_0 428 LIGQLAGGIAHDFNNMLGVIMGNTELAMCN--------DGLDPSV-- 464

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l i+r+aer ++ ++lL ++r ++
CP001099_0 465 ----------EENLAEIYRAAERSAEMTSQLLAFARKQTA 494


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-14 4 0|=
-13 24 1|*===
-12 101 46|======*========
-11 185 242|=========================== *
-10 360 449|==================================================== *
-9 372 463|====================================================== *
-8 343 347|=================================================*
-7 247 218|===============================*====
-6 165 125|=================*======
-5 108 69|=========*======
-4 49 36|=====*=
-3 31 19|==*==
-2 17 10|=*=
-1 16 5|*==
0 7 2|*
1 2 1|*
> 2 12 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 186.4456
P(chi-square) = 4.776e-34

Total sequences searched: 2043

Whole sequence top hits:
tophits_s report:
Total hits: 9
Satisfying E cutoff: 9
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 9
Satisfying E cutoff: 9
Total memory: 24K


Acknowledgements:

This research is funded by:

Developed by: