Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
41 projects found  

1 accessions found for Chloroherpeton thalassium ATCC 35110  

Data for CP001100  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001100.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001100_0603 CDS_710909-706020 103.4 3.8e-29 1
CP001100_0019 CDS_27825-25462 100.0 3.6e-28 1
CP001100_2221 CDS_2682333-2683835 78.9 3.3e-22 1
CP001100_1870 CDS_2232065-2228901 69.7 1.4e-19 1
CP001100_1518 CDS_1795724-1797829 59.6 9.9e-17 1
CP001100_1639 CDS_1959391-1955291 56.1 9.8e-16 1
CP001100_0866 CDS_1042783-1041824 50.6 3.5e-14 1
CP001100_0409 CDS_478054-476537 48.1 1.9e-13 1
CP001100_2703 CDS_3287274-3283939 47.1 3.4e-13 1
CP001100_2289 CDS_2772950-2777584 46.9 3.9e-13 1
CP001100_2463 CDS_2985661-2990139 46.3 6e-13 1
CP001100_1532 CDS_1821673-1825674 46.1 6.8e-13 1
CP001100_2586 CDS_3135057-3132397 44.8 1.5e-12 1
CP001100_0489 CDS_574219-572336 44.2 2.3e-12 1
CP001100_0021 CDS_32501-28503 43.2 4.3e-12 1
CP001100_2162 CDS_2612144-2617519 42.5 7.1e-12 1
CP001100_0783 CDS_936371-939742 41.3 1.6e-11 1
CP001100_0685 CDS_797975-802438 41.2 1.7e-11 1
CP001100_1571 CDS_1875668-1874955 40.1 3.3e-11 1
CP001100_1470 CDS_1741169-1742689 38.1 1.2e-10 1
CP001100_1992 CDS_2398641-2396245 38.0 1.3e-10 1
CP001100_0725 CDS_856050-854326 36.2 4.4e-10 2
CP001100_2214 CDS_2669724-2673371 34.8 1e-09 1
CP001100_1601 CDS_1908417-1910765 27.8 1e-07 1
CP001100_0889 CDS_1069311-1071179 27.5 1.2e-07 2
CP001100_0656 CDS_767843-769750 27.3 1.4e-07 1
CP001100_0607 CDS_714858-716972 27.2 1.5e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001100_0603 1/1 927 992 .. 1 87 [] 103.4 3.8e-29
CP001100_0019 1/1 272 337 .. 1 87 [] 100.0 3.6e-28
CP001100_2221 1/1 261 329 .. 1 87 [] 78.9 3.3e-22
CP001100_1870 1/1 820 886 .. 1 87 [] 69.7 1.4e-19
CP001100_1518 1/1 472 538 .. 1 87 [] 59.6 9.9e-17
CP001100_1639 1/1 1146 1214 .. 1 87 [] 56.1 9.8e-16
CP001100_0866 1/1 91 157 .. 1 87 [] 50.6 3.5e-14
CP001100_0409 1/1 269 335 .. 1 87 [] 48.1 1.9e-13
CP001100_2703 1/1 734 805 .. 1 87 [] 47.1 3.4e-13
CP001100_2289 1/1 1174 1239 .. 1 87 [] 46.9 3.9e-13
CP001100_2463 1/1 1265 1334 .. 1 87 [] 46.3 6e-13
CP001100_1532 1/1 959 1024 .. 1 87 [] 46.1 6.8e-13
CP001100_2586 1/1 636 702 .. 1 87 [] 44.8 1.5e-12
CP001100_0489 1/1 255 321 .. 1 87 [] 44.2 2.3e-12
CP001100_0021 1/1 1110 1178 .. 1 87 [] 43.2 4.3e-12
CP001100_2162 1/1 1554 1620 .. 1 87 [] 42.5 7.1e-12
CP001100_0783 1/1 751 816 .. 1 87 [] 41.3 1.6e-11
CP001100_0685 1/1 1120 1186 .. 1 87 [] 41.2 1.7e-11
CP001100_1571 1/1 148 206 .. 1 74 [. 40.1 3.3e-11
CP001100_1470 1/1 267 333 .. 1 87 [] 38.1 1.2e-10
CP001100_1992 1/1 430 496 .. 1 87 [] 38.0 1.3e-10
CP001100_2214 1/1 847 913 .. 1 87 [] 34.8 1e-09
CP001100_1601 1/1 418 483 .. 1 87 [] 27.8 1e-07
CP001100_0656 1/1 265 331 .. 1 87 [] 27.3 1.4e-07
CP001100_0607 1/1 465 540 .. 1 87 [] 27.2 1.5e-07
CP001100_0725 1/2 297 346 .. 1 76 [. 27.0 1.7e-07

Alignments of top-scoring domains:
CP001100_0603: domain 1 of 1, from 927 to 992: score 103.4, E = 3.8e-29
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak eflan+sHE+RTP++a++g++ lLl+ t+l++eq
CP001100_0 927 AKAEFLANMSHEIRTPMNAVIGMTGLLLD---------TPLTAEQ-- 962

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey+eti+++++ ll ind+Ld+s+ie+g
CP001100_0 963 ----------REYVETIRSSGDALLTVINDILDFSKIESG 992

CP001100_0019: domain 1 of 1, from 272 to 337: score 100.0, E = 3.6e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++flan+sHE+RTP++a++g++ lLl+ t+ls+eq
CP001100_0 272 SKERFLANMSHEIRTPMNAVIGMTNLLLR---------TPLSSEQ-- 307

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e +++i++++e ll +ind+Ld+s+ie+g
CP001100_0 308 ----------AECVDIIKQSSENLLVIINDILDFSKIESG 337

CP001100_2221: domain 1 of 1, from 261 to 329: score 78.9, E = 3.3e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ef+an+sH+LRTPL++I gy e++ + + lse+++
CP001100_2 261 LLREFIANISHDLRTPLASIEGYMETIIL-------KKHLLSEKEK- 299

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y++til+ ++ l+rL+n+lLdls++ea
CP001100_2 300 ----------QQYFNTILKNTRTLNRLVNQLLDLSKLEAR 329

CP001100_1870: domain 1 of 1, from 820 to 886: score 69.7, E = 1.4e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+efl+ ++H+L++PL +I+g+a+l +e ++++e +
CP001100_1 820 LKTEFLSIAAHDLKNPLQSILGFAQLVKE---------NAKNAEMV- 856

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + i+++++r+ Li dlL+ s+ie+g
CP001100_1 857 ----------AQMGDAIYQSSKRMFLLIKDLLETSKIESG 886

CP001100_1518: domain 1 of 1, from 472 to 538: score 59.6, E = 9.9e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k e l + HELR PL +I+g+++l+l +e ++r
CP001100_1 472 IKLETLGIIVHELRSPLMGIIGFSDLMLS---------QEYEHDTR- 508

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yle i++++ l++L++++L r+e+g
CP001100_1 509 ----------KQYLEAIYKSGSKLSDLVDRFLNVLRMESG 538

CP001100_1639: domain 1 of 1, from 1146 to 1214: score 56.1, E = 9.8e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+a ++ +L+ P+++I+ yaelL++e+ +e++ +
CP001100_1 1146 DLERFAAIAANDLKEPIHTISNYAELLQNEF-------AEKNNSE-- 1183

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y++y++ +l+ + r+ rLi+ lLd+s+ +g
CP001100_1 1184 ---------YQQYTNLMLDGTSRMTRLIDALLDYSKVSSG 1214

CP001100_0866: domain 1 of 1, from 91 to 157: score 50.6, E = 3.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kse+l+ ++H++++PL aI++yael+ + e +ee r
CP001100_0 91 FKSELLSIAAHDMKNPLQAIMAYAELITM----------ESDEESR- 126

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + i++++++l +Lin lL+ s ie+g
CP001100_0 127 ---------VFKRASLIYKASQQLFKLINSLLETSAIESG 157

CP001100_0409: domain 1 of 1, from 269 to 335: score 48.1, E = 1.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e +a++sHE ++PL++I+ +++++ + +e ++
CP001100_0 269 TLGEIAAAISHEVKNPLAGIKSMVQAMMY---------DLEPESDN- 305

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+++il+e++r++ i+d ++r + +
CP001100_0 306 ----------YHYTQRILQEVDRINTFIEDTFAFARHRRQ 335

CP001100_2703: domain 1 of 1, from 734 to 805: score 47.1, E = 3.4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++ +++H++++ L+ I+gyael +e+l ++l+ +
CP001100_2 734 AIGTLAGGIAHDFNNILAMIMGYAELSREDL-------SALNQPA-- 771

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
d e+ e l+ il +++r +L+n++L++s +
CP001100_2 772 ------DSEIDENLKGILVASKRAKELVNQILTFSHRTEH 805

CP001100_2289: domain 1 of 1, from 1174 to 1239: score 46.9, E = 3.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++++++H++++ Lt I++ elL+e +ee
CP001100_2 1174 SIGLLASGIAHDMNNILTPIMMSMELLKE---------IVDDEEG-- 1209

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e ++ti ++++r +Li++lL ++r ++
CP001100_2 1210 ----------FERIQTINKSTRRAKNLIQQLLAFARGKSE 1239

CP001100_2463: domain 1 of 1, from 1265 to 1334: score 46.3, E = 6e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+a++ H+++ PL+aI gy+++L++ + t +e
CP001100_2 1265 IRNNFFAMVVHDMKVPLSAIYGYSDMLKN-----FNPQTVDPEYF-- 1304

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ ++i+ +a ++rL++++Ld+s+ e+
CP001100_2 1305 ----------EEIMSRIHLSAGNINRLVQEILDFSKYESK 1334

CP001100_1532: domain 1 of 1, from 959 to 1024: score 46.1, E = 6.8e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++++++H+L++ L+ I++ ++lL++ +++++++
CP001100_1 959 SLGRLVSGIAHDLNNILSPILLSLQLLKR----------KATDDKA- 994

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++t++ +a+r +L+ ++L +++ +
CP001100_1 995 ----------KGLIDTLELSAKRGGNLVKQVLSFAKGVEC 1024

CP001100_2586: domain 1 of 1, from 636 to 702: score 44.8, E = 1.5e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + + +++HE+++ L++I g+a +L+++l +l+e+
CP001100_2 636 AIETLSGGVAHEFNNLLAVIAGNAGILRRKL--------KLDEQL-- 672

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y++ i+ +++r L + lL++sr
CP001100_2 673 ----------RKYINQIDLATKRAATLTEKLLEFSRQSDF 702

CP001100_0489: domain 1 of 1, from 255 to 321: score 44.2, E = 2.3e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H+L++ Lt+I+++++l l e+ e ++e
CP001100_0 255 AVGKLAGGIAHDLNNILTVIIANSDLVLSEV--------EDGSEA-- 291

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e + i+ +aer +L+++lL +sr +
CP001100_0 292 ----------YESVTQIETAAERAAHLVRQLLAFSRKQIL 321

CP001100_0021: domain 1 of 1, from 1110 to 1178: score 43.2, E = 4.3e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+ +sH+L+ PL aI +++ L ++ + l+ee
CP001100_0 1110 ELKDFAYIVSHDLKAPLRAIGSLSSWLYSDY------VDRLDEEG-- 1148

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l+ + ++r+ +Li+ +L++sri+
CP001100_0 1149 ----------KETLSLLVGRVKRMHDLIEGILQYSRIGRI 1178

CP001100_2162: domain 1 of 1, from 1554 to 1620: score 42.5, E = 7.1e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lta++g+ae+L+++l + +e
CP001100_2 1554 AVGRLTGGVAHDFNNLLTAVLGNAEILEKKL--------TGNEFV-- 1590

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +e+i+ +a r ++L + lL++sr g
CP001100_2 1591 ----------LKNIERIKASATRGSELTRKLLTFSRQKKG 1620

CP001100_0783: domain 1 of 1, from 751 to 816: score 41.3, E = 1.6e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++ +++H+L++ L+ I++ ++ L++ + ++++
CP001100_0 751 NIGMLAGGIAHDLNNILSPILLSIQYLKM----------KVQDPHL- 786

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l++++++a+r +++ ++L +s+ ++g
CP001100_0 787 ----------SDVLDSVRQSAQRGADMVKQILSFSKGREG 816

CP001100_0685: domain 1 of 1, from 1120 to 1186: score 41.2, E = 1.7e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt+I++++e++l++l ++++ q
CP001100_0 1120 AIGQLAGGVAHDFNNILTVILANSEIALAKL-------KDQPSAQ-- 1157

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ ++++a+r +L ++lL +sr +
CP001100_0 1158 -----------DNIQQVKKAANRAASLTRQLLAFSRKQIL 1186

CP001100_1571: domain 1 of 1, from 148 to 206: score 40.1, E = 3.3e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++ +++HE+++PLt++ g+++l +++l+ + ++l+ e++
CP001100_1 148 ALNQMSNTVAHEINNPLTGLTGFLQLTKARLE----RKSTLTQEEI- 189

peLRledpeyreyletilreaerllrL<-*
+ l i r++e+ +r+
CP001100_1 190 ----------SKTLAAINRCLEQAQRI 206

CP001100_1470: domain 1 of 1, from 267 to 333: score 38.1, E = 1.2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++ +++H++++ L++I+g aelL+ +ls+ l
CP001100_1 267 ALGRLTGGVAHDFNNLLAVIKGSAELLEI----------KLSDTPSL 303

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++i+ +a r ++L n lL +sr +
CP001100_1 304 ----------VKQAKRIKISAVRGSELTNKLLGFSRHKQK 333

CP001100_1992: domain 1 of 1, from 430 to 496: score 38.0, E = 1.3e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++ +++H++++ L++I+gyae++le + +++
CP001100_1 430 SIGRLAGGVAHDFNNMLSVIQGYAEMALE---------KMHPTPKL- 466

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l i+++a+r + ++lL ++r ++
CP001100_1 467 ----------YNALLEIRKAAQRSADVTRQLLAFARKQTI 496

CP001100_2214: domain 1 of 1, from 847 to 913: score 34.8, E = 1e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++ +++H++++ L +I g ++l+++ +++ +
CP001100_2 847 SIGTLAGGIAHDFNNLLMGIFGKISLAKT--------ALDKTHPA-- 883

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+ ++++ +r rL +lL++s+ +a+
CP001100_2 884 ----------ARYLDGAEQAMNRATRLTKQLLTFSKGGAP 913

CP001100_1601: domain 1 of 1, from 418 to 483: score 27.8, E = 1e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++++++H++++ ++ +++++e + +++e+
CP001100_1 418 AIGTLASGIAHDFNNVMSMLIMASEQMSH---------LAKDEKL-- 453

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y++ i++++er ++ +lL +sr ++g
CP001100_1 454 ----------LKYIDLIRQATERGMNITKQLLIFSRSRQG 483

CP001100_0656: domain 1 of 1, from 265 to 331: score 27.3, E = 1.4e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++ +++ L++ L++I +y elLl+ +l++ l
CP001100_0 265 AVGTLAGGIANHLNNLLSGIVTYPELLLN----------DLPPNSPL 301

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re l i++++er ++++dlL+lsr +
CP001100_0 302 ----------REPLMLIKSSGERAAEIVQDLLTLSRRGVT 331

CP001100_0607: domain 1 of 1, from 465 to 540: score 27.2, E = 1.5e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+e+l ++H+LR PL +++g+ +l++ee + l+ q
CP001100_0 465 FKTELLGIAAHDLRSPLQSVIGFNSLIKEEI-------ARLTLVQP- 503

peLRledpeyreyle.......tilreaerllrLindlLdlsrieag<-*
+ l++ +++i + a r+l+Lin+lL+ + ie+g
CP001100_0 504 ----------DDQLQhviamngIIGKTAARMLDLINELLESTAIESG 540

CP001100_0725: domain 1 of 2, from 297 to 346: score 27.0, E = 1.7e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a+l+HE++TPL +r ++e++ e e
CP001100_0 297 SLGQMVAGLAHEMNTPLGFVRNNIEIIGE---------NE------- 327

peLRledpeyreyletilreaerllrLin<-*
r++l+ ++++ + l++L+n
CP001100_0 328 ----------RDFLSALEKSKKILNHLVN 346


Histogram of all scores:
score obs exp (one = represents 9 sequences)
----- --- ---
-14 9 0|=
-13 30 2|*===
-12 123 61|======*=======
-11 273 321|=============================== *
-10 444 595|================================================== *
-9 517 615|==========================================================*
-8 466 460|===================================================*
-7 335 290|================================*=====
-6 211 167|==================*=====
-5 130 91|==========*====
-4 61 49|=====*=
-3 31 25|==*=
-2 20 13|=*=
-1 12 7|*=
0 8 3|*
1 3 1|*
2 1 1|*
> 3 36 -|====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 166.6613
P(chi-square) = 5.735e-30

Total sequences searched: 2710

Whole sequence top hits:
tophits_s report:
Total hits: 27
Satisfying E cutoff: 27
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 26
Satisfying E cutoff: 26
Total memory: 31K


Acknowledgements:

This research is funded by:

Developed by: