Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
41 projects found  

1 accessions found for Chlorobium phaeobacteroides BS1  

Data for CP001101  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001101.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001101_1689 CDS_1905359-1903344 98.6 8.3e-28 1
CP001101_2026 CDS_2281364-2278383 98.3 1e-27 1
CP001101_1623 CDS_1834215-1832389 97.7 1.4e-27 1
CP001101_0945 CDS_1065208-1066644 59.3 1.1e-16 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001101_1689 1/1 286 351 .. 1 87 [] 98.6 8.3e-28
CP001101_2026 1/1 336 401 .. 1 87 [] 98.3 1e-27
CP001101_1623 1/1 365 432 .. 1 87 [] 97.7 1.4e-27
CP001101_0945 1/1 256 322 .. 1 87 [] 59.3 1.1e-16

Alignments of top-scoring domains:
CP001101_1689: domain 1 of 1, from 286 to 351: score 98.6, E = 8.3e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHELRTPL+a++g++elL e t+l+ +q
CP001101_1 286 AKSEFLANISHELRTPLHAVIGMTELLIE---------TTLDKDQ-- 321

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r y +t++++a+ ll Lind+Ld+srieag
CP001101_1 322 ----------RYYSDTLYSSAQMLLMLINDILDFSRIEAG 351

CP001101_2026: domain 1 of 1, from 336 to 401: score 98.3, E = 1e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHE+RTP+++++g++elLl+ ++l+ eq
CP001101_2 336 AKSEFLANMSHEIRTPMNGVIGMSELLLR---------STLDKEQ-- 371

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ eti +++ ll+L+nd+Ld+s+iea
CP001101_2 372 ----------KKFAETINASGKNLLHLLNDILDFSKIEAD 401

CP001101_1623: domain 1 of 1, from 365 to 432: score 97.7, E = 1.4e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f++++sHELRTPLt+I gy+e+Lle ++ ++ +++
CP001101_1 365 MRRDFVSSVSHELRTPLTSITGYTETLLE---------GAIDDAENA 402

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l++il+e+erl +Lind+Ldls+ie+g
CP001101_1 403 ----------KHFLQIILQESERLTALINDVLDLSKIESG 432

CP001101_0945: domain 1 of 1, from 256 to 322: score 59.3, E = 1.1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f++++sHEL+TPLt+++g++e+L + ++++
CP001101_0 256 REKQFTSDASHELKTPLTSVMGTLEVLIR---------KPRDPGY-- 291

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ + ++e++r++ Li++lL l+r ag
CP001101_0 292 ---------YEARIGFCINELKRMSGLIEQLLLLARYNAG 322


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-15 1 0|=
-14 15 0|==
-13 40 1|*====
-12 116 56|======*========
-11 270 292|================================== *
-10 458 542|==========================================================*
-9 467 560|==========================================================*
-8 427 419|====================================================*=
-7 279 264|================================*==
-6 149 152|==================*
-5 109 83|==========*===
-4 57 44|=====*==
-3 34 23|==*==
-2 15 12|=*
-1 8 6|*
0 12 3|*=
> 1 12 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 111.2026
P(chi-square) = 1.053e-18

Total sequences searched: 2469

Whole sequence top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: