Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
41 projects found  

1 accessions found for Candidatus Amoebophilus asiaticus 5a2  

Data for CP001102  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001102.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001102_0489 CDS_703834-696932 44.9 6.8e-13 1
CP001102_0895 CDS_1298412-1305230 38.9 3.4e-11 1
CP001102_1037 CDS_1481821-1488732 36.4 1.8e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001102_0489 1/1 1890 1975 .. 1 87 [] 44.9 6.8e-13
CP001102_0895 1/1 1851 1935 .. 1 87 [] 38.9 3.4e-11
CP001102_1037 1/1 1903 1985 .. 1 87 [] 36.4 1.8e-10

Alignments of top-scoring domains:
CP001102_0489: domain 1 of 1, from 1890 to 1975: score 44.9, E = 6.8e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldk.............v
+++ef+ ++ HE+R+P+++I+ ++ L+e k ++ ++ +++ ++
CP001102_0 1890 QQEEFINTVCHEIRNPMNGISNTVVFLEE---KitslkklkeslpgS 1933

.lagdtelseeqrlpeLRledpeyreyletilreaerllrLindlLdlsr
+++ el + +e ++ti++++++ l in +L lsr
CP001102_0 1934 fQPELKELLPTL------------EEDIQTIQHCVNHQLVVINGVLNLSR 1971

ieag<-*
+eag
CP001102_0 1972 LEAG 1975

CP001102_0895: domain 1 of 1, from 1851 to 1935: score 38.9, E = 3.4e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldk........v.lagd
++ ef+ ++ HE R+P+++I+ +++ ++e k ++ + + +l+ +
CP001102_0 1851 QQAEFVNTVCHEVRNPMNGISNTVSFMEE---KltslkaykKsLPTS 1894

telseeqrlpeLRledpeyreyletilreaerllrLindlLdlsrieag<
+ ee +++ +e ++ti++++++ + in +L sr+eag
CP001102_0 1895 LPVLEELVQTL--------EEDIKTIQQCVNHQIAVINGVLNWSRLEAG 1935

-*

CP001102_0 - -

CP001102_1037: domain 1 of 1, from 1903 to 1985: score 36.4, E = 1.8e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkv.lagdtelseeqr
+++ f+ ++ HE+R+P+++I+ +++ ++e+l +l + + ++ +
CP001102_1 1903 EQRWFIDTVCHEIRNPMSGISNTVSFMEEKL--AsLKAYKKSLPKPA 1947

lpeLR..ledpeyreyletilreaerllrLindlLdlsrieag<-*
l eL ++l +e ++ti++++++ + in +L lsr+eag
CP001102_1 1948 LEELVqtL-----EEDIKTIKHCVNHQIAVINGVLSLSRLEAG 1985


Histogram of all scores:
score obs exp (one = represents 5 sequences)
----- --- ---
-15 1 0|=
-14 7 0|==
-13 34 0|=======
-12 74 29|=====*=========
-11 144 152|============================= *
-10 208 282|========================================== *
-9 250 291|================================================== *
-8 189 218|====================================== *
-7 136 137|===========================*
-6 111 79|===============*=======
-5 50 43|========*=
-4 38 23|====*===
-3 15 12|==*
-2 11 6|=*=
-1 6 3|*=
0 3 1|*
1 0 0|
> 2 6 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 124.8485
P(chi-square) = 5.235e-22

Total sequences searched: 1283

Whole sequence top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: