Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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Data for CP001103  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HWE_HK.hmm [HWE_HK]
Sequence database: CP001103.Gprot.fsa
per-sequence score cutoff: >= 60.0 [TC1]
per-domain score cutoff: >= 60.0 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HWE_HK
Accession: PF07536.4
Description: HWE histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001103_1093 CDS_1171624-1174092 78.7 1.2e-26 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001103_1093 1/1 490 571 .. 1 85 [] 78.7 1.2e-26

Alignments of top-scoring domains:
CP001103_1093: domain 1 of 1, from 490 to 571: score 78.7, E = 1.2e-26
*->ELnHRVKNtLAvVQSiarQTlRnaasldefveaFsgRLqALsraHdL
ELnHRV+N+L +V++i+ QT++n ++def +++s R+ AL+ Hd+
CP001103_1 490 ELNHRVRNILNLVSAIIGQTSQNKKDIDEFITSLSSRISALALGHDQ 536

VpLtrseWagAdLreLleaeLaPyggedaeRitlsGPd<-*
Lt ++ ++++++Ll eL +y+ + + ++GPd
CP001103_1 537 --LTHASYNSVRFKDLLHNELKAYMIR-ESSFKIEGPD 571


Histogram of all scores:
score obs exp (one = represents 14 sequences)
----- --- ---
-16 2 0|=
-15 11 0|=
-14 67 0|=====
-13 130 0|==========
-12 486 0|===================================
-11 497 33|==*=================================
-10 770 421|==============================*========================
-9 613 1042|============================================ *
-8 681 1081|================================================= *
-7 363 726|========================== *
-6 201 396|=============== *
-5 138 196|========== *
-4 57 93|===== *
-3 25 43|== *
-2 14 19|=*
-1 8 9|*
0 4 4|*
1 3 1|*
> 2 2 -|=


% Statistical details of theoretical EVD fit:
mu = -7.9989
lambda = 0.7843
chi-sq statistic = 7396.2529
P(chi-square) = 0

Total sequences searched: 4072

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: