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Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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41 projects found  

2 accessions found for Prosthecochloris aestuarii DSM 271  

Data for CP001108  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001108.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001108_1854 CDS_2089273-2086298 101.5 1.1e-28 1
CP001108_0249 CDS_268532-265410 101.0 1.5e-28 1
CP001108_1591 CDS_1784613-1782583 97.4 1.6e-27 1
CP001108_0751 CDS_819999-821798 93.2 2.5e-26 1
CP001108_1385 CDS_1556915-1554702 77.7 6.1e-22 1
CP001108_1175 CDS_1319966-1323385 47.2 2.7e-13 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001108_1854 1/1 339 404 .. 1 87 [] 101.5 1.1e-28
CP001108_0249 1/1 515 580 .. 1 87 [] 101.0 1.5e-28
CP001108_1591 1/1 284 349 .. 1 87 [] 97.4 1.6e-27
CP001108_0751 1/1 364 431 .. 1 87 [] 93.2 2.5e-26
CP001108_1385 1/1 509 577 .. 1 87 [] 77.7 6.1e-22
CP001108_1175 1/1 887 953 .. 1 87 [] 47.2 2.7e-13

Alignments of top-scoring domains:
CP001108_1854: domain 1 of 1, from 339 to 404: score 101.5, E = 1.1e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+flan+sHE+RTPL++++g+++lLle ++l+ eq
CP001108_1 339 AKSQFLANMSHEIRTPLNGVIGMTDLLLE---------SALDTEQ-- 374

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ +ti ++++ llrL+nd+Ld+s+iea+
CP001108_1 375 ----------RKFAQTISSSGRNLLRLVNDILDFSKIEAN 404

CP001108_0249: domain 1 of 1, from 515 to 580: score 101.0, E = 1.5e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHE+RTP+++++g++ lLle t+l+++q
CP001108_0 515 AKSEFLANISHEIRTPMNGVIGMTGLLLE---------TDLTPQQ-- 550

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y ti ++a++ll+Lind+Ld s+ieag
CP001108_0 551 ----------HRYAGTIASSAQSLLDLINDILDVSKIEAG 580

CP001108_1591: domain 1 of 1, from 284 to 349: score 97.4, E = 1.6e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHE+RTPL+a++g++elLle + l +q
CP001108_1 284 AKSEFLANISHEIRTPLHAVIGMTELLLE---------SSLAKDQ-- 319

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y +ti ++a+ ll LindlLd+srieag
CP001108_1 320 ----------QYYADTISSSAHLLLLLINDLLDFSRIEAG 349

CP001108_0751: domain 1 of 1, from 364 to 431: score 93.2, E = 2.5e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f++++sHELRTPLt+I+gy+e+Lle ++l++ + +
CP001108_0 364 IRRDFVSSVSHELRTPLTSIKGYTETLLE---------GALDDREDA 401

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l++il+e+e+l +Lind+Ldls+ie+g
CP001108_0 402 ----------MNFLRIILQESEQLTALINDVLDLSKIESG 431

CP001108_1385: domain 1 of 1, from 509 to 577: score 77.7, E = 6.1e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+an+sHELR PL +I+g++++Ll+ ++ el+ e++
CP001108_1 509 LKNDFIANVSHELRSPLFSILGFSSTLLK-------ERKELDFETT- 547

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+l +i++e++rl++Li+d+L sri++g
CP001108_1 548 ----------GEFLGIIHDESKRLSSLIEDVLNVSRIDSG 577

CP001108_1175: domain 1 of 1, from 887 to 953: score 47.2, E = 2.7e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + +++H++++ Lt I+g++e++ + + + +e++
CP001108_1 887 TLGTLSGGIAHDFNNILTPIIGFTEIAIR--------SLPSESETI- 924

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+t+lr+a+r +L++++L++sr + +
CP001108_1 925 -----------KDLDTVLRAARRAKKLVQQMLTFSRKDPP 953


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-15 1 0|=
-14 9 0|==
-13 34 1|*====
-12 126 51|======*=========
-11 234 268|============================== *
-10 391 497|================================================= *
-9 424 513|===================================================== *
-8 363 384|============================================== *
-7 258 242|==============================*==
-6 176 139|=================*====
-5 98 76|=========*===
-4 57 40|====*===
-3 38 21|==*==
-2 21 11|=*=
-1 14 5|*=
0 4 3|*
1 1 1|*
2 4 0|=
> 3 10 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 205.1755
P(chi-square) = 6.267e-38

Total sequences searched: 2263

Whole sequence top hits:
tophits_s report:
Total hits: 6
Satisfying E cutoff: 6
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 6
Satisfying E cutoff: 6
Total memory: 23K


Acknowledgements:

This research is funded by:

Developed by: