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Firmicutes Fusobacteria Gammaproteobacteria
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Thermotogae
Classification of phyla is from NCBI page
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264 projects found  

1 accessions found for Stenotrophomonas maltophilia R551-3  

Data for CP001111  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP001111.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001111_0257 CDS_306927-308141 92.5 5.6e-27 1
CP001111_1912 CDS_2153131-2151029 67.3 1.5e-19 1
CP001111_1098 CDS_1253747-1254943 65.3 6e-19 1
CP001111_2337 CDS_2628836-2631865 41.7 5.3e-12 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001111_0257 1/1 203 270 .. 1 70 [] 92.5 5.6e-27
CP001111_1912 1/1 494 559 .. 1 70 [] 67.3 1.5e-19
CP001111_1098 1/1 197 261 .. 1 70 [] 65.3 6e-19
CP001111_2337 1/1 793 859 .. 1 70 [] 41.7 5.3e-12

Alignments of top-scoring domains:
CP001111_0257: domain 1 of 1, from 203 to 270: score 92.5, E = 5.6e-27
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+RI R+LHD +g++Ls+i+l+lelar+l+ d+d+e+ar+++ e+
CP001111_0 203 ERERIGRDLHDLLGHTLSLITLKLELARKLY--DRDDERARQEIGEA 247

relarealaevRrllgdLRpaal<-*
+++areala+vR +++++R ++l
CP001111_0 248 EAIAREALAQVRSAVTGIRASDL 270

CP001111_1912: domain 1 of 1, from 494 to 559: score 67.3, E = 1.5e-19
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+ I+R+LHD +gQ+++aikl +++a+ d + dp++ +e l++i
CP001111_1 494 ERRAISRDLHDDIGQAITAIKLSAHAAQ---D-EHDPQRRAEDLAQI 536

relarealaevRrllgdLRpaal<-*
la+++ + +R++ + LRp++l
CP001111_1 537 VSLADTTVSKLRDISTLLRPPQL 559

CP001111_1098: domain 1 of 1, from 197 to 261: score 65.3, E = 6e-19
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+RI+RELHD +g++L+a++l le+a +l+ ++a e++++
CP001111_1 197 ERTRISRELHDLLGHQLTALTLNLEVASHLA-----EGQALEHVKRS 238

relarealaevRrllgdLRpaal<-*
++la+ l vR+++++LR+++
CP001111_1 239 HGLAKLLLGNVREVVSQLRETGA 261

CP001111_2337: domain 1 of 1, from 793 to 859: score 41.7, E = 5.3e-12
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+RIAR+LHD++ Q+ +++l l+++ + + e +r +l+ +
CP001111_2 793 ERERIARDLHDTLLQGSQGLILRLHAIS-QS--PQTSETVRGQLESA 836

relarealaevRrllgdLRpaal<-*
++la++ lae R+ + +LR++ +
CP001111_2 837 MQLAERNLAEGRERVNALRDGPF 859


Histogram of all scores:
score obs exp (one = represents 11 sequences)
----- --- ---
-14 5 0|=
-13 35 0|====
-12 60 45|====*=
-11 147 370|============== *
-10 403 858|===================================== *
-9 647 975|==========================================================*
-8 589 751|====================================================== *
-7 558 472|==========================================*========
-6 517 267|========================*======================
-5 440 143|============*===========================
-4 243 74|======*================
-3 149 38|===*==========
-2 87 19|=*======
-1 47 10|*====
0 38 5|*===
1 23 2|*==
2 23 1|*==
3 8 0|=
4 5 0|=
5 3 0|=
6 1 0|=
7 1 0|=
8 2 0|=
9 2 0|=
10 0 0|
11 0 0|
> 12 6 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 2662.0044
P(chi-square) = 0

Total sequences searched: 4039

Whole sequence top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: