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Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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7 projects found  

4 accessions found for Deinococcus deserti VCD115  

Data for CP001114  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001114.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001114_0161 CDS_170030-171616 81.9 4.7e-23 1
CP001114_1175 CDS_1296056-1299394 65.1 2.7e-18 1
CP001114_0548 CDS_589955-591160 56.8 6e-16 1
CP001114_2391 CDS_2606163-2603272 53.5 5e-15 1
CP001114_0390 CDS_408898-410778 52.1 1.2e-14 1
CP001114_1176 CDS_1299387-1300628 51.8 1.6e-14 1
CP001114_0200 CDS_209578-207977 50.2 4.4e-14 1
CP001114_0717 CDS_808058-805734 47.5 2.6e-13 1
CP001114_2187 CDS_2383271-2384242 47.2 3.1e-13 1
CP001114_1606 CDS_1768512-1769585 40.0 3.3e-11 1
CP001114_2448 CDS_2670000-2668579 38.8 7.4e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001114_0161 1/1 296 362 .. 1 87 [] 81.9 4.7e-23
CP001114_1175 1/1 887 955 .. 1 87 [] 65.1 2.7e-18
CP001114_0548 1/1 164 230 .. 1 87 [] 56.8 6e-16
CP001114_2391 1/1 734 802 .. 1 87 [] 53.5 5e-15
CP001114_0390 1/1 407 475 .. 1 87 [] 52.1 1.2e-14
CP001114_1176 1/1 206 268 .. 1 87 [] 51.8 1.6e-14
CP001114_0200 1/1 295 363 .. 1 87 [] 50.2 4.4e-14
CP001114_0717 1/1 529 597 .. 1 87 [] 47.5 2.6e-13
CP001114_2187 1/1 112 168 .. 1 78 [. 47.2 3.1e-13
CP001114_1606 1/1 123 189 .. 1 87 [] 40.0 3.3e-11
CP001114_2448 1/1 247 313 .. 1 87 [] 38.8 7.4e-11

Alignments of top-scoring domains:
CP001114_0161: domain 1 of 1, from 296 to 362: score 81.9, E = 4.7e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f++++sHELRTP+taI+g+a+ Ll+ +t + +q
CP001114_0 296 SQRRFTSDASHELRTPVTAISGHASYLLR--------RTSPTGQQ-- 332

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l++i++e+erl +Li lL+l+r ++g
CP001114_0 333 ----------AESLKIIQSESERLTNLIASLLQLARSDSG 362

CP001114_1175: domain 1 of 1, from 887 to 955: score 65.1, E = 2.7e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f ++sH+LRTPL + g+a+lL+++l ++ls++
CP001114_1 887 ELEAFSYSVSHDLRTPLRHVVGFADLLRKDLG------DNLSPKS-- 925

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl++i +++ r+++Li+dlL +sr++ +
CP001114_1 926 ----------ARYLSVISEASTRMSQLIDDLLAFSRMGRQ 955

CP001114_0548: domain 1 of 1, from 164 to 230: score 56.8, E = 6e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++ +l H+L++P++a++g++e+ ++ dt +e+
CP001114_0 164 VRDQLVHMLVHDLKNPIAAVMGLLEIVQD--------DTRVPEDA-- 200

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++++++++e+++ll+L ++Ld +i+ag
CP001114_0 201 ----------RDLVRIARDETQHLLHLAANMLDVRKIQAG 230

CP001114_2391: domain 1 of 1, from 734 to 802: score 53.5, E = 5e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+ +sH+L PL +I ++elL +++ + l+++
CP001114_2 734 DLEQFAYVASHDLQEPLRTITSFTELLARRYQ------GQLDSKA-- 772

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y++ ++a+r+++Li+dlL +sr +a+
CP001114_2 773 ----------DRYIHFTVDAARRMSSLIQDLLAFSRVGAE 802

CP001114_0390: domain 1 of 1, from 407 to 475: score 52.1, E = 1.2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f ++sH+LR P+ I+g++ lL+ +d t++ ++
CP001114_0 407 ELDAFSYTISHDLRAPVRHIKGFVGLLRSVMD------TDAHPKS-- 445

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl++i+++++rl++Li+ +L ++r ++
CP001114_0 446 ----------GRYLNVIEDSTDRLNNLIDAMLNFARQSQE 475

CP001114_1176: domain 1 of 1, from 206 to 268: score 51.8, E = 1.6e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ fla sHELRTPLta+ gy+ +++ + ++++
CP001114_1 206 MQKTFLAETSHELRTPLTALHGYLRRAER---------EVGGSQT-- 241

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l ++r ae + rL+ndlL+lsr e
CP001114_1 242 -------------LLDAQRVAENMTRLVNDLLQLSRGELV 268

CP001114_0200: domain 1 of 1, from 295 to 363: score 50.2, E = 4.4e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ +sH+L PL +I y+elL +++ + l++
CP001114_0 295 ELEQFAYVASHDLQEPLRTIGSYTELLARRYQ------GQLDARA-- 333

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y+ ++++ r+ Li+dlL +sr ++g
CP001114_0 334 ----------DQYITFTIDATSRMKTLIQDLLAFSRVRQG 363

CP001114_0717: domain 1 of 1, from 529 to 597: score 47.5, E = 2.6e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++ + +sH+L PL a++ +e L+ +ld + l+++
CP001114_0 529 EFEQIAHVISHDLQAPLQAVISSTEQLKGQLD------GQLDAQS-- 567

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y+ i + a+r+ r+i+dlL ++r + g
CP001114_0 568 ----------KTYVGHIADGAHRMKRMIDDLLMYARVDRG 597

CP001114_2187: domain 1 of 1, from 112 to 168: score 47.2, E = 3.1e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e +a lsHE+RTP++a+rg +e+L+ +++ + +
CP001114_2 112 ELREATAVLSHEFRTPVAALRGVLEALEY----------DMPTDLA- 147

peLRledpeyreyletilreaerllrLindl<-*
+ +++ l+e+erl rL++dl
CP001114_2 148 ----------QNFVKQGLQETERLARLVEDL 168

CP001114_1606: domain 1 of 1, from 123 to 189: score 40.0, E = 3.3e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+a+l H+L+TPL a + ++++L + +l+ee+r
CP001114_1 123 RRNAFMATLVHDLKTPLIATSHLTHALAT---------LPLPEEER- 159

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re + i+ e+ rll+L++++ d r e +
CP001114_1 160 ----------REVGQHIQAETGRLLALVQQMADAHRFERE 189

CP001114_2448: domain 1 of 1, from 247 to 313: score 38.8, E = 7.4e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + fl++++H+LR PL+a+++ +e l+ ++++
CP001114_2 247 REQAFLRAAAHDLRSPLAALSARVEGSLA---------RDRDAGR-- 282

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr l+ i +++rl L n lL l+r +
CP001114_2 283 ---------YRSDLKEIGTDLNRLATLTNHLLLLARDPSA 313


Histogram of all scores:
score obs exp (one = represents 9 sequences)
----- --- ---
-14 4 0|=
-13 19 1|*==
-12 92 59|======*====
-11 255 307|============================= *
-10 463 570|==================================================== *
-9 508 588|========================================================= *
-8 453 440|================================================*==
-7 321 277|==============================*=====
-6 197 159|=================*====
-5 135 87|=========*=====
-4 56 46|=====*=
-3 30 24|==*=
-2 14 13|=*
-1 14 6|*=
0 8 3|*
1 6 1|*
2 2 0|=
> 3 16 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 109.9220
P(chi-square) = 1.899e-18

Total sequences searched: 2593

Whole sequence top hits:
tophits_s report:
Total hits: 11
Satisfying E cutoff: 11
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 11
Satisfying E cutoff: 11
Total memory: 25K


Acknowledgements:

This research is funded by:

Developed by: